Factsheet for VIT_10s0003g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03080.t01	Wine grape	nucleus	13.87	42.49
Zm00001d043915_P002	Maize	nucleus	50.0	28.09
Solyc02g077660.2.1	Tomato	nucleus	51.4	21.87
VIT_12s0028g03090.t01	Wine grape	nucleus	45.52	21.33
GSMUA_Achr9P06610_001	Banana	nucleus	50.98	20.53
GSMUA_Achr8P27210_001	Banana	nucleus	54.76	20.48
HORVU3Hr1G061660.1	Barley	nucleus	51.82	20.07
KXG33081	Sorghum	nucleus	51.4	19.92
TraesCS3A01G245700.2	Wheat	nucleus	51.54	19.85
TraesCS3D01G245800.2	Wheat	nucleus	51.54	19.84
TraesCS3B01G273900.1	Wheat	nucleus	51.4	19.84
KXG33083	Sorghum	nucleus	50.0	19.58
Zm00001d039002_P019	Maize	nucleus, plastid	49.58	19.32
Zm00001d009562_P007	Maize	nucleus, plastid	50.14	19.07
Zm00001d011560_P012	Maize	nucleus	49.44	18.97
HORVU1Hr1G087180.1	Barley	nucleus	48.6	18.69
TraesCS1A01G395600.1	Wheat	nucleus	48.32	18.56
TraesCS1B01G424100.1	Wheat	nucleus	48.32	18.52
TraesCS1D01G403700.1	Wheat	nucleus	47.9	18.47
GSMUA_Achr6P26980_001	Banana	nucleus	51.96	16.53
Os05t0562400-01	Rice	nucleus	30.11	15.39
VIT_06s0009g03530.t01	Wine grape	nucleus	9.24	12.5
VIT_19s0085g00350.t01	Wine grape	nucleus	18.07	10.89
VIT_07s0005g06050.t01	Wine grape	extracellular	2.8	7.55
VIT_10s0003g00270.t01	Wine grape	nucleus	3.36	2.14
Zm00001d043914_P001	Maize	nucleus	0.7	0.89
OQU75646	Sorghum	cytosol	0.7	0.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	ProteinID:CCB55625	ProteinID:CCB55625.1	ncoils:Coil	InterPro:DDT_dom
UniProt:F6HM37	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR018501	PFAM:PF00046	PFAM:PF02791	PFscan:PS50071	PFscan:PS50827
PANTHER:PTHR36968	PANTHER:PTHR36968:SF6	SMART:SM00389	SMART:SM00571	SUPFAM:SSF46689	UniParc:UPI0002109E53
ArrayExpress:VIT_10s0003g00290	EnsemblPlantsGene:VIT_10s0003g00290	EnsemblPlants:VIT_10s0003g00290.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:1574464..1581789

Molecular Weight (calculated)

82091.6 Da

IEP (calculated)

7.173

GRAVY (calculated)

-0.906

Length

714 amino acids

Sequence
(BLAST)

001: MEATSDEENQ NRNNTANNMN SNEAQSKPKR QMKTPFQLQT LERAYALEPY PTEASRAELS EKLGLSDRQL QMWFCHRRLK DKKEGQAKEA ASKKPRNAVA
101: EEFEDEARSE HGSHSGSGSL SGSSPLGYGQ LPQVLSGNMG PMGRRSYESP QSIFELRVIA SVEAQLGEPL RDDGPILGME FDPLPPDAFG APIAIVEHQK
201: QSAYCYEEKV YEHRDAKSKK AAARAFHDHP FHQDKSSTRP DAYGRVGPSH FYDRPIDGPS SETSAFLHRT EPSSREYGEQ GYVSHARVLS QQDKQERILS
301: SPGDYDSVPR SDSFMNSGKD AQFSGHSIGP ENSYVLSDRQ ITHNGDVLRM DRKRKGEEAR ITTDAEAHEK RIRKELEKQD ILRRKREEQI RKEMERHDRE
401: RRKEEERLMR ERQREVERLQ REQRREIERR EKFLQKESLR VRLAEKRRQK EELRREKEAV RLKASIEKAT ARRIARESME LIEDDRLELM ELAAASKGLP
501: SIVSLDHDTL QNLESFRDLL SVFPPTSVQL RRPFAVQPWD DSEENIGNLL MVWRFLITFA DVLQLWPFTL DEFVQAFHDY DSRLMGEIHI ALVKLIIKDI
601: EDVARTPSLG LGTNQNTAAG PEGGHPHIVE GAYAWGFDIR NWQRHLNPLT WPEILRQFAL SAGFGPQLKK RSSEWSYSRE NNEIIIHHAP VLIHTRKGTI
701: KCNMLNVPCQ CSSG

Best Arabidopsis Sequence Match ( AT1G28420.1 )
(BLAST)

0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS

Arabidopsis Description

RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.