Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0562400-01 | Rice | nucleus | 45.93 | 50.11 |
| KRH55891 | Soybean | nucleus | 57.68 | 49.35 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 35.63 | 48.44 |
| Solyc07g053610.2.1 | Tomato | nucleus | 53.61 | 45.85 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 53.08 | 45.63 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 21.33 | 45.52 |
| Zm00001d043915_P002 | Maize | nucleus | 37.8 | 45.32 |
| Bra033725.1-P | Field mustard | nucleus | 47.51 | 44.15 |
| CDY22305 | Canola | nucleus | 47.38 | 44.05 |
| AT5G44180.1 | Thale cress | nucleus | 48.82 | 43.92 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 54.92 | 43.84 |
| CDX94760 | Canola | nucleus | 47.77 | 43.7 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 51.25 | 42.13 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 50.85 | 42.03 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 51.12 | 41.99 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 50.79 | 41.84 |
| KXG33083 | Sorghum | nucleus | 49.87 | 41.69 |
| KXG33081 | Sorghum | nucleus | 50.07 | 41.42 |
| Zm00001d011560_P012 | Maize | nucleus | 49.28 | 40.35 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 49.08 | 40.28 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 49.02 | 40.1 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 48.69 | 40.06 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 48.75 | 39.97 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 47.31 | 39.36 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 47.7 | 38.73 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 53.35 | 36.23 |
| Zm00001d043914_P001 | Maize | nucleus | 11.09 | 30.02 |
| OQU75646 | Sorghum | cytosol | 11.15 | 29.46 |
| VIT_07s0005g06050.t01 | Wine grape | extracellular | 5.05 | 29.06 |
| VIT_19s0085g00350.t01 | Wine grape | nucleus | 15.75 | 20.25 |
| VIT_06s0009g03530.t01 | Wine grape | nucleus | 3.81 | 10.98 |
| VIT_12s0028g03080.t01 | Wine grape | nucleus | 0.66 | 4.29 |
Protein Annotations
| MapMan:15.5.3.7 | ProteinID:CCB47311 | ProteinID:CCB47311.1 | ncoils:Coil | InterPro:DDT_dom | UniProt:F6H5H0 |
| EMBL:FN595235 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010228 | GO:GO:0043565 | GO:GO:0045892 | InterPro:HB1/Asxl_HTH | InterPro:IPR018501 |
| PFAM:PF02791 | PFAM:PF05066 | PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50827 | PANTHER:PTHR36968 |
| SMART:SM00571 | UniParc:UPI00021089EC | ArrayExpress:VIT_12s0028g03090 | EnsemblPlantsGene:VIT_12s0028g03090 | EnsemblPlants:VIT_12s0028g03090.t01 | InterPro:WHIM1_dom |
| InterPro:WHIM2_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:3850586..3862626
Molecular Weight (calculated)
170974.0 Da
IEP (calculated)
4.722
GRAVY (calculated)
-0.799
Length
1524 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLYLQGAGRA VHEYQFLPEQ PSVRTDTYER VGSHYYGSPA DGPSARASLS TGRSFMHGNE QVASGYGFQG QMPNLNLLSQ QGRQNHGLSS TSGDYDTVPR
0101: KNSLGSIGMD AHFGSHPITA LDNPFISSDR RVTNDEDVLR MERKRKSEEA RIAKEVEAHE KRIRKELEKQ DILRRKREEQ MRKEMERHDR ERRKEEERLL
0201: REKQREEERY QREQRRELER REKFLQKESI RAEKMRQKEE LRREKEAARV KAANDRAIAR RIAKESMELI EDERLELMEL VALSKGLPSI LSLDSETLQN
0301: LESFRDMLTA FPPKSVQLRR PFTIQPWTDS EENIGNLLMV WRFLITFSDV LGLWPFTMDE FVQAFHDYDP RLLGEIHVAL LRSIIKDIED VARTPSIGLG
0401: ANQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNPLTWP EILRQFALSA GFGPKLKKRN VEETYLRDDN EGNDCEDIIT NLRSGAAAEN AVAIMQERGF
0501: SNPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTILEVADKI QKSGLRDLTT SKTPEASIAA ALSRDGKLFE RTAPSTYCVR PAYRKDPADA DAILSAAREK
0601: IQIFKSGCSD GEEADDVERD EDSESDVVED PEVDDLGADP NLKKEAQNSY EADGFQSKSV SENEKETLFA EAMETKGGLE NAGEGLSSTH SEGFKEVIST
0701: GASADQSIDV AGISNKPTNP DQEDTDIDES NSGEPWVQGL MEGEYSDLSV EERLNALVAL IGVAIEGNSI RIVLEERLEA ANALKKQMWA EAQLDKRRMK
0801: EEYVMKMHYP SFMGNKTEQN VTMSTTEGRQ SPMVAVDEKN NELSMNPVVH PEPFSDPQND QSFLNNLPPE RNLPMQDFSA GPENIPLQLP GYAAEKSRSQ
0901: LKSYIGHKAE EMYVYRSLPL GQDRRRNRYW QFITSASRND PNSGRIFVEL RNGCWRLIDS EEGFDALVAS LDARGVREAH LQSMLQRIEI SFKETVRRNL
1001: QLSSIGRQSG GAVKTEDSEM ARPTGCSVDI DSPSSTVCVS NSDATEPSAS FSIELGRNDA EKFDALNRYQ DFEKWMWKEC INPSTLCALK YGKKSPLDSN
1101: YSEHVAQCEE KHKVDLEWGF SSSSDSSPLR IKLLKAHLAL IEVSVLPEAL QPDWTDTYRK SWGMKLHASS SAEDLIQILT LLESNIRRDY LSSDFETTNE
1201: LLGLSNASGC AVDDSLAAGS VPVLPWIPQT TAAVAIRLIE LDASISYMLH QKLESHKDKG ANDFIRVPAK FSVMKNMQDD ESAEAPIEAV HLRDENWVEM
1301: GSGHTSSGRG RGGRRGRGRT RGGRSQRRVI GSRSESSKRS SAANNEKLGL LGWKGRTRGR GGRRRGRRTV RSRQKPVKQV VEDIPEEIIF KPPPRNLDRE
1401: WNVETPTREP VEEAENVSSS ESSEEYDDDN GQGTGDECDD LGVDEYSGPF NGKSEDVIEE SDEIGDGDED EEEEGEEEED DEGDVDVGGY IIGDSDEERN
1501: GYEDGGHTGV GDEGGGYASS DYSE
0101: KNSLGSIGMD AHFGSHPITA LDNPFISSDR RVTNDEDVLR MERKRKSEEA RIAKEVEAHE KRIRKELEKQ DILRRKREEQ MRKEMERHDR ERRKEEERLL
0201: REKQREEERY QREQRRELER REKFLQKESI RAEKMRQKEE LRREKEAARV KAANDRAIAR RIAKESMELI EDERLELMEL VALSKGLPSI LSLDSETLQN
0301: LESFRDMLTA FPPKSVQLRR PFTIQPWTDS EENIGNLLMV WRFLITFSDV LGLWPFTMDE FVQAFHDYDP RLLGEIHVAL LRSIIKDIED VARTPSIGLG
0401: ANQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNPLTWP EILRQFALSA GFGPKLKKRN VEETYLRDDN EGNDCEDIIT NLRSGAAAEN AVAIMQERGF
0501: SNPRRSRHRL TPGTVKFAAF HVLSLEGSKG LTILEVADKI QKSGLRDLTT SKTPEASIAA ALSRDGKLFE RTAPSTYCVR PAYRKDPADA DAILSAAREK
0601: IQIFKSGCSD GEEADDVERD EDSESDVVED PEVDDLGADP NLKKEAQNSY EADGFQSKSV SENEKETLFA EAMETKGGLE NAGEGLSSTH SEGFKEVIST
0701: GASADQSIDV AGISNKPTNP DQEDTDIDES NSGEPWVQGL MEGEYSDLSV EERLNALVAL IGVAIEGNSI RIVLEERLEA ANALKKQMWA EAQLDKRRMK
0801: EEYVMKMHYP SFMGNKTEQN VTMSTTEGRQ SPMVAVDEKN NELSMNPVVH PEPFSDPQND QSFLNNLPPE RNLPMQDFSA GPENIPLQLP GYAAEKSRSQ
0901: LKSYIGHKAE EMYVYRSLPL GQDRRRNRYW QFITSASRND PNSGRIFVEL RNGCWRLIDS EEGFDALVAS LDARGVREAH LQSMLQRIEI SFKETVRRNL
1001: QLSSIGRQSG GAVKTEDSEM ARPTGCSVDI DSPSSTVCVS NSDATEPSAS FSIELGRNDA EKFDALNRYQ DFEKWMWKEC INPSTLCALK YGKKSPLDSN
1101: YSEHVAQCEE KHKVDLEWGF SSSSDSSPLR IKLLKAHLAL IEVSVLPEAL QPDWTDTYRK SWGMKLHASS SAEDLIQILT LLESNIRRDY LSSDFETTNE
1201: LLGLSNASGC AVDDSLAAGS VPVLPWIPQT TAAVAIRLIE LDASISYMLH QKLESHKDKG ANDFIRVPAK FSVMKNMQDD ESAEAPIEAV HLRDENWVEM
1301: GSGHTSSGRG RGGRRGRGRT RGGRSQRRVI GSRSESSKRS SAANNEKLGL LGWKGRTRGR GGRRRGRRTV RSRQKPVKQV VEDIPEEIIF KPPPRNLDRE
1401: WNVETPTREP VEEAENVSSS ESSEEYDDDN GQGTGDECDD LGVDEYSGPF NGKSEDVIEE SDEIGDGDED EEEEGEEEED DEGDVDVGGY IIGDSDEERN
1501: GYEDGGHTGV GDEGGGYASS DYSE
0001: MEGGSEKTTP EGCGGESKSK RKMKTAAQLE VLENTYSAEP YPSEAIRADL SVKLNLSDRQ LQMWFCHRRL KERKSTTPSK RQRKELVTPT AMESWEPPVN
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
Arabidopsis Description
RLT2Homeobox-DDT domain protein RLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.