Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- nucleus 1
- mitochondrion 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0085g00350.t01 | Wine grape | nucleus | 85.28 | 19.07 |
| GSMUA_Achr9P24830_001 | Banana | cytosol, nucleus, plasma membrane | 47.92 | 15.64 |
| PGSC0003DMT400002603 | Potato | cytosol | 49.06 | 15.13 |
| HORVU3Hr1G020400.11 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 42.64 | 15.11 |
| KRH60120 | Soybean | nucleus | 54.72 | 13.4 |
| CDX89461 | Canola | cytosol, endoplasmic reticulum | 24.15 | 13.28 |
| KRH41406 | Soybean | nucleus | 53.21 | 13.04 |
| Solyc11g006200.1.1 | Tomato | nucleus | 49.06 | 12.04 |
| TraesCS3A01G112300.2 | Wheat | nucleus | 46.79 | 11.41 |
| TraesCS2A01G124800.1 | Wheat | nucleus | 46.42 | 11.28 |
| TraesCS2B01G147300.4 | Wheat | nucleus | 46.42 | 11.26 |
| TraesCS2D01G127700.1 | Wheat | vacuole | 46.79 | 11.17 |
| TraesCS3B01G131700.9 | Wheat | nucleus | 46.04 | 11.07 |
| Bra014277.1-P | Field mustard | nucleus | 42.26 | 10.98 |
| AT4G12750.1 | Thale cress | nucleus | 46.04 | 10.92 |
| CDY60841 | Canola | nucleus | 42.64 | 10.84 |
| TraesCS3D01G114300.2 | Wheat | nucleus | 46.79 | 10.82 |
| CDY51255 | Canola | nucleus | 42.26 | 10.73 |
| HORVU2Hr1G021950.4 | Barley | nucleus, plastid | 46.42 | 10.35 |
| EER90701 | Sorghum | nucleus | 44.15 | 10.2 |
| Zm00001d034515_P002 | Maize | nucleus | 44.53 | 10.02 |
| GSMUA_Achr6P22010_001 | Banana | nucleus | 34.72 | 8.88 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 22.64 | 5.35 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 29.06 | 5.05 |
| VIT_06s0009g03530.t01 | Wine grape | nucleus | 6.04 | 3.03 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 7.55 | 2.8 |
| VIT_12s0028g03080.t01 | Wine grape | nucleus | 1.51 | 1.72 |
Protein Annotations
| ArrayExpress:VIT_07s0005g06050 | EMBL:FN596502 | EnsemblPlants:VIT_07s0005g06050.t01 | EnsemblPlantsGene:VIT_07s0005g06050 | InterPro:WHIM1_dom | PANTHER:PTHR36968 |
| PANTHER:PTHR36968:SF5 | PFAM:PF15612 | ProteinID:CCB60261 | ProteinID:CCB60261.1 | SEG:seg | UniParc:UPI0002109710 |
| UniProt:F6HZZ5 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:10786790..10787628
Molecular Weight (calculated)
29721.3 Da
IEP (calculated)
4.923
GRAVY (calculated)
-0.374
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKLSSGFLP HVIKNCKFLG LLQSVEQNEF VLKFWKRSLD SLTWTEIQRQ VLVATGFGSR KGTLRKEALD KELNPMVKYG LHPGTLKGEL FSILLNQGNN
101: GMKVPDLARC VQISELNLAG TTEELELLIY STLSSDITLY EKISSSSYCL RITSHINEAE NFQSDTDDSG SIDDDSKDNR KYSSNNDSDS DSRTPNLGKL
201: NYMNHHKQRK GMLTIYTEID ETYPGEVWLL GLVEGEYSDL SIEEKLNALM ALVDLVSGGS SIRMA
101: GMKVPDLARC VQISELNLAG TTEELELLIY STLSSDITLY EKISSSSYCL RITSHINEAE NFQSDTDDSG SIDDDSKDNR KYSSNNDSDS DSRTPNLGKL
201: NYMNHHKQRK GMLTIYTEID ETYPGEVWLL GLVEGEYSDL SIEEKLNALM ALVDLVSGGS SIRMA
0001: MKRKSPLQVQ ALEGFYLEQM YPTPKEMEDL GKSLGLTLKE VRGWFKRRRS RGKGVKSMAN DGLGAKNPQL YDRSLMRSST SSRCVGVAVE ERCIVGTRKA
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR
Arabidopsis Description
Homeodomain-like transcriptional regulator [Source:TAIR;Acc:AT4G12750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.