CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014277.1-P	Field mustard	nucleus	86.1	40.69
CDY51255	Canola	nucleus	87.34	40.33
CDY60841	Canola	nucleus	85.68	39.64
AT4G12750.1	Thale cress	nucleus	69.71	30.08
GSMUA_Achr9P24830_001	Banana	cytosol, nucleus, plasma membrane	49.38	29.31
PGSC0003DMT400002603	Potato	cytosol	51.04	28.64
HORVU3Hr1G020400.11	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.53	27.41
KRH41406	Soybean	nucleus	55.6	24.79
KRH60120	Soybean	nucleus	54.98	24.49
VIT_07s0005g06050.t01	Wine grape	extracellular	13.28	24.15
Solyc11g006200.1.1	Tomato	nucleus	50.83	22.69
VIT_19s0085g00350.t01	Wine grape	nucleus	55.19	22.45
TraesCS2A01G124800.1	Wheat	nucleus	45.85	20.28
TraesCS3A01G112300.2	Wheat	nucleus	45.64	20.24
TraesCS2B01G147300.4	Wheat	nucleus	45.44	20.05
TraesCS3B01G131700.9	Wheat	nucleus	45.44	19.87
TraesCS2D01G127700.1	Wheat	vacuole	45.64	19.82
TraesCS3D01G114300.2	Wheat	nucleus	45.44	19.11
EER90701	Sorghum	nucleus	44.61	18.74
HORVU2Hr1G021950.4	Barley	nucleus, plastid	45.44	18.43
Zm00001d034515_P002	Maize	nucleus	44.81	18.34
GSMUA_Achr6P22010_001	Banana	nucleus	35.06	16.31
CDY35748	Canola	nucleus	25.73	8.01
CDX90154	Canola	nucleus	25.93	7.95
CDY65661	Canola	nucleus	25.93	7.48
CDY34099	Canola	nucleus	25.73	7.45
CDY22305	Canola	nucleus	24.27	7.14
CDX94760	Canola	nucleus	24.07	6.96
CDY22114	Canola	nucleus	4.77	4.84
CDY21949	Canola	nucleus	4.15	4.18

Protein Annotations

EnsemblPlants:CDX89461	EnsemblPlantsGene:GSBRNA2T00149720001	InterPro:WHIM2_dom	PANTHER:PTHR10390	PANTHER:PTHR10390:SF44	PFAM:PF15613
ProteinID:CDX89461	ProteinID:CDX89461.1	SEG:seg	UniParc:UPI0004EBEF8F	MapMan:35.1	:

Description

BnaC04g34800D

Coordinates

chrLK031859:-:99978..102320

Molecular Weight (calculated)

54368.7 Da

IEP (calculated)

6.695

GRAVY (calculated)

-0.352

Length

482 amino acids

Sequence
(BLAST)

001: MTRQEAVSML LLVDVETELQ RGSFSTLSIS CKFLALLQSV ESQILILDMW KDSLNSLTWA EILRQILVAA GFGSVKRAGG QSEELSKERR LMKKYGLRLG
101: TLKGELFRML NEQGGKNGLK ISELANAAVE VAALNLATAS EEEGERSICS TLASDITLFE KSREHHPLIN NHPRVSWVHG GERIEELSKS SDSHPVDSSS
201: IVGAAFAKLA GDNVHPMQSV YLGSDRRFNR YWLFLGPCNA NDPGHRCVYF ESSEDGHWEV ISHKEALRAL LSVLDDRGRR EARLIDRRSY LDTLTRCKSC
301: HDLYWRDEKH CKICHATFEL DIDLEERYAI HAATCNRKNE ESSDSFPDHK VLSSQLQSLK AAVYAIESAM PEDALIGAWK KSAHRLWAKR LRRSSTLSEI
401: TQVIGDFVGA INEDWLWHFG EEEEHYSNAL MGEIITSFPS MPRTTSAIAL WLVKLDTLIA SYVVEKAPLP EGNQLNRTRK HK

Best Arabidopsis Sequence Match ( AT4G12750.1 )
(BLAST)

0001: MKRKSPLQVQ ALEGFYLEQM YPTPKEMEDL GKSLGLTLKE VRGWFKRRRS RGKGVKSMAN DGLGAKNPQL YDRSLMRSST SSRCVGVAVE ERCIVGTRKA
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR

Arabidopsis Description

Homeodomain-like transcriptional regulator [Source:TAIR;Acc:AT4G12750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.