CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21949	Canola	nucleus	88.63	87.89
Bra034196.1-P	Field mustard	nucleus	84.84	84.49
AT4G03250.1	Thale cress	nucleus	51.58	48.32
KRH62715	Soybean	nucleus	25.68	45.35
VIT_06s0009g03530.t01	Wine grape	nucleus	33.68	30.3
KRH45931	Soybean	nucleus	32.0	28.36
KRH73554	Soybean	nucleus	30.95	27.95
KRH14573	Soybean	nucleus	30.74	27.7
KRG99068	Soybean	nucleus	30.32	27.32
PGSC0003DMT400080267	Potato	nucleus	29.26	27.2
Solyc11g065110.1.1	Tomato	nucleus	29.05	26.69
PGSC0003DMT400012008	Potato	nucleus	27.37	25.59
Solyc12g099760.1.1	Tomato	nucleus	27.16	24.81
Os01t0672201-00	Rice	nucleus	7.37	13.06
Zm00001d025550_P001	Maize	nucleus	6.53	7.65
CDY35748	Canola	nucleus	21.89	6.72
CDX90154	Canola	nucleus	22.11	6.68
CDY34099	Canola	nucleus	21.68	6.19
CDY65661	Canola	nucleus	21.47	6.1
CDY60841	Canola	nucleus	12.0	5.47
CDY22305	Canola	nucleus	18.74	5.43
CDX94760	Canola	nucleus	18.53	5.28
CDY51255	Canola	nucleus	11.58	5.27
CDX89461	Canola	cytosol, endoplasmic reticulum	4.84	4.77
Os01t0672300-01	Rice	nucleus	2.32	2.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	GO:A0A078G9T7	UniProt:A0A078G9T7	EnsemblPlants:CDY22114	ProteinID:CDY22114
ProteinID:CDY22114.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00018502001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0004EE525D	SEG:seg	:	:	:

Description

BnaA09g01430DBnaA09g01430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9T7]

Coordinates

chrLK032127:+:609913..612593

Molecular Weight (calculated)

53236.7 Da

IEP (calculated)

7.304

GRAVY (calculated)

-1.139

Length

475 amino acids

Sequence
(BLAST)

001: MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC
101: GSTKQTDYWN PKPREVESQR LYDDDGEDST SSERRSLHKN LVSSKDVESS RYVGHSEHHP QAMRSYGVSK PSGYLKVKGD SENVAITAVK RQLGRQYRED
201: GPPLGVEFDP LPPGAFDPQT NNVIVQEPIY VGNQRRSHPP YFTGTRKSFV PGLSYEPARK PKMLSSDPYS SSEEEDEDDD DDDMMGGMEP GLGDKQTLRE
301: PSFKSPSLLT VPDRKGPPQG VPLTNSKKSH ISSKGRAEGS RNNLIDNFHN LSGTSQTHDY DKSILNGGRK TGYLTKSSNM LPLSGSRSSD SMERDTSSGM
401: VGKYHGEKMN HMKMHREKLH STGEPLVTKR LKHGYSQQVY SETFERKDQI NRSGVELPSS FNGDETEESS SSSMD

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.