Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080267 | Potato | nucleus | 78.72 | 79.65 |
| KRH62715 | Soybean | nucleus | 24.37 | 46.84 |
| Solyc12g099760.1.1 | Tomato | nucleus | 36.17 | 35.96 |
| VIT_06s0009g03530.t01 | Wine grape | nucleus | 32.11 | 31.44 |
| KRH73554 | Soybean | nucleus | 30.95 | 30.42 |
| Bra034196.1-P | Field mustard | nucleus | 27.85 | 30.19 |
| AT4G03250.1 | Thale cress | nucleus | 29.01 | 29.59 |
| CDY22114 | Canola | nucleus | 26.69 | 29.05 |
| CDY21949 | Canola | nucleus | 26.89 | 29.02 |
| KRH14573 | Soybean | nucleus | 29.4 | 28.84 |
| KRG99068 | Soybean | nucleus | 28.82 | 28.27 |
| KRH45931 | Soybean | nucleus | 27.85 | 26.87 |
| Os01t0672201-00 | Rice | nucleus | 6.77 | 13.06 |
| Zm00001d025550_P001 | Maize | nucleus | 6.58 | 8.4 |
| Solyc02g077660.2.1 | Tomato | nucleus | 18.57 | 5.72 |
| Solyc07g053610.2.1 | Tomato | nucleus | 18.18 | 5.27 |
| Solyc11g006200.1.1 | Tomato | nucleus | 10.44 | 5.0 |
| Os01t0672300-01 | Rice | nucleus | 2.32 | 2.87 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | UniProt:K4D9C4 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF489 |
| SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc11g065110.1 | EnsemblPlants:Solyc11g065110.1.1 | UniParc:UPI000276980F | SEG:seg |
Description
No Description!
Coordinates
chr11:+:50430348..50438493
Molecular Weight (calculated)
58245.4 Da
IEP (calculated)
7.457
GRAVY (calculated)
-1.039
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEDLSEVHS KDDKGQTEKN PKRIIKTRAQ IEALEKLYEE HKYPTDELKA DLAESSGLTE KQISGWFCHR RLKDKRLSNG EIYINGRQDR SSGVIQDHGS
101: GFRQDSCGST KQADDKKFDH REVESRRLTG AEFSTADVAY EGGTHFRGKS NCMDDDSSRS SSSLRNECFS QNAEPYDKAT SRYISQTLAT DFKGVRPKNG
201: PSGYLKVKGQ VENAAITAVK RQLGRHYRLD GPPLGIEFDP LPPGAFESSA PNLVNDSYYS PEPVPACSPD MSNVYRRSNG FGPNFKSNSH DSDLDGLSFK
301: RKSNSTHPEY RFNPKPKLKS SEYNEYPEWN SSLDMFEGSA RKMTVDSRDS CKLMAKHGRG EIRTSTGSGN DLRSPYVGKV DREQVKPRFS SRSEVSLTAL
401: EKEHLDRKPS DFNGSGYPNF RERELHKIVE KDHISGKRPV VDENSNLVRV KVQVPRHNEI TIVQRAPVEV PDHQAYLRRA SMIGMPPQTN HQISTAAEKP
501: PSFSEDEETE DTSSFEG
101: GFRQDSCGST KQADDKKFDH REVESRRLTG AEFSTADVAY EGGTHFRGKS NCMDDDSSRS SSSLRNECFS QNAEPYDKAT SRYISQTLAT DFKGVRPKNG
201: PSGYLKVKGQ VENAAITAVK RQLGRHYRLD GPPLGIEFDP LPPGAFESSA PNLVNDSYYS PEPVPACSPD MSNVYRRSNG FGPNFKSNSH DSDLDGLSFK
301: RKSNSTHPEY RFNPKPKLKS SEYNEYPEWN SSLDMFEGSA RKMTVDSRDS CKLMAKHGRG EIRTSTGSGN DLRSPYVGKV DREQVKPRFS SRSEVSLTAL
401: EKEHLDRKPS DFNGSGYPNF RERELHKIVE KDHISGKRPV VDENSNLVRV KVQVPRHNEI TIVQRAPVEV PDHQAYLRRA SMIGMPPQTN HQISTAAEKP
501: PSFSEDEETE DTSSFEG
001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.