Factsheet for Bra034196.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21949	Canola	nucleus	86.79	86.43
CDY22114	Canola	nucleus	84.49	84.84
AT4G03250.1	Thale cress	nucleus	55.35	52.07
KRH62715	Soybean	nucleus	25.79	45.72
VIT_06s0009g03530.t01	Wine grape	nucleus	35.01	31.63
KRH73554	Soybean	nucleus	32.29	29.28
KRH14573	Soybean	nucleus	31.66	28.65
KRH45931	Soybean	nucleus	31.87	28.36
PGSC0003DMT400080267	Potato	nucleus	29.98	27.98
KRG99068	Soybean	nucleus	30.82	27.89
Solyc11g065110.1.1	Tomato	nucleus	30.19	27.85
Solyc12g099760.1.1	Tomato	nucleus	28.51	26.15
PGSC0003DMT400012008	Potato	nucleus	27.67	25.98
Os01t0672201-00	Rice	nucleus	7.34	13.06
Zm00001d025550_P001	Maize	nucleus	7.13	8.4
Bra010869.1-P	Field mustard	nucleus	20.96	6.37
Bra032908.1-P	Field mustard	nucleus	20.34	5.84
Bra033725.1-P	Field mustard	nucleus	18.24	5.3
Bra014277.1-P	Field mustard	nucleus	10.48	4.9
Os01t0672300-01	Rice	nucleus	2.31	2.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	EnsemblPlantsGene:Bra034196	EnsemblPlants:Bra034196.1	EnsemblPlants:Bra034196.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M4EZF3	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002543BE6
SEG:seg	:	:	:	:	:

Description

AT4G03250 (E=3e-169) | homeobox-leucine zipper family protein

Coordinates

chrA01:-:26994306..26996230

Molecular Weight (calculated)

53487.0 Da

IEP (calculated)

8.214

GRAVY (calculated)

-1.147

Length

477 amino acids

Sequence
(BLAST)

001: MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAKIAEEIG LTEKQVSGWF CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC
101: GSTKQTDYWN PKPREVESQR LYDDDGEDST SSERRSSLHK NLVSSKDVES SRYVGRSEHH PQTMRSHGLS KPSGYLKVKG DSENVAITAV KRQLGRQYRE
201: DGPPLGVEFD PLPPGAFEPQ TNSVVVQEPI YVGNQRRSHT PYFTGTRKSF VPGPSYEPAR KPKMLLSDPY SSSEDEDDDD DDMMGGMEPG LGDKQTLREP
301: SFKSPSLSYS NTVPDRKGPP QGVPLTNSKK SHISSKGRAE GSRYNLIDNF HNLSGTSQTH DYDKSILNGG RKTGYLTKSS NMLPLSGSRS SDSMERDTSS
401: GMVGKYHGEK MNHMKMHREK LHSTGEPLVT KRLKHGYPQQ VYSETFERKD QINRSGVELP SSFNGDETEE SSSSSMD

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.