Factsheet for Solyc12g099760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012008	Potato	nucleus	60.77	62.2
KRH62715	Soybean	nucleus	24.81	47.96
Solyc11g065110.1.1	Tomato	nucleus	35.96	36.17
VIT_06s0009g03530.t01	Wine grape	nucleus	30.77	30.3
KRH14573	Soybean	nucleus	29.62	29.22
Bra034196.1-P	Field mustard	nucleus	26.15	28.51
KRG99068	Soybean	nucleus	28.65	28.27
KRH73554	Soybean	nucleus	28.46	28.14
KRH45931	Soybean	nucleus	28.46	27.61
CDY21949	Canola	nucleus	25.19	27.35
CDY22114	Canola	nucleus	24.81	27.16
AT4G03250.1	Thale cress	nucleus	23.85	24.46
Os01t0672201-00	Rice	nucleus	6.35	12.31
Zm00001d025550_P001	Maize	nucleus	6.73	8.64
Solyc11g006200.1.1	Tomato	nucleus	11.92	5.74
Solyc02g077660.2.1	Tomato	nucleus	15.0	4.65
Solyc07g053610.2.1	Tomato	nucleus	15.0	4.38
Os01t0672300-01	Rice	nucleus	1.73	2.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K4DHZ7	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc12g099760.1	EnsemblPlants:Solyc12g099760.1.1	UniParc:UPI000276A864	SEG:seg

Description

No Description!

Coordinates

chr12:-:66773448..66778346

Molecular Weight (calculated)

58456.4 Da

IEP (calculated)

6.420

GRAVY (calculated)

-1.031

Length

520 amino acids

Sequence
(BLAST)

001: MEDSHEIHSE DDKGHVGKLK ARIMKTPAQL EGLEKFYQEH KYPTESMKLE VAQSLGLTEK QVSGWFCHRR LKDKRLSSRE TNAKGRQDRS SGVIQDRGSG
101: FRQDSCGSTK QGDDKYFDHR EVESRRLTGP EVSTADVTRE ADTRYRAESN LMEDTPSGSS SSLRDARFSQ NVESFDMATS RYLPGNEPTD LKCVKPRTGP
201: SGYLKVKAKV ENASITAVKR QLGSLYRQDG PLLGVVFDQL PQGAFESSVQ TPVDDPIYSG EPVPDLTPDF TKVDKRSNSC IGYGSISKIN SHGSDLDGAN
301: LKKSNKSSHP EYYINQKPDR NSSMHNGDRY YLGRNSSIEM RKDSGREVAV DGRCNYKLMA KHDGAANPGS SGGFQSSYIG KVNREQVTAR FTSRDGLSLD
401: IAEEEDLQCK PSNFVHKGSK QHYCPERELS STVEKDYIHV DRPTVDEDYN EDHVKIQWEK EMRVAKRATD EEAPNHQEYV RKASVTRMPS QTNHQISFAA
501: EMSSSFSEDD KTEETSSFED

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.