CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14573	Soybean	nucleus	85.13	43.45
KRH73554	Soybean	nucleus	76.58	39.16
KRG99068	Soybean	nucleus	66.54	33.97
KRH45931	Soybean	nucleus	67.29	33.77
VIT_06s0009g03530.t01	Wine grape	nucleus	56.51	28.79
PGSC0003DMT400080267	Potato	nucleus	49.44	26.03
AT4G03250.1	Thale cress	nucleus	48.7	25.84
Bra034196.1-P	Field mustard	nucleus	45.72	25.79
CDY22114	Canola	nucleus	45.35	25.68
PGSC0003DMT400012008	Potato	nucleus	47.96	25.39
CDY21949	Canola	nucleus	44.24	24.84
Solyc12g099760.1.1	Tomato	nucleus	47.96	24.81
Solyc11g065110.1.1	Tomato	nucleus	46.84	24.37
Os01t0672201-00	Rice	nucleus	12.64	12.69
Zm00001d025550_P001	Maize	nucleus	10.04	6.67
KRH21359	Soybean	nucleus	21.93	3.36
KRH50116	Soybean	nucleus	21.93	3.31
KRH20389	Soybean	nucleus	21.93	3.29
KRH55891	Soybean	nucleus	21.19	3.2
KRH41406	Soybean	nucleus	11.15	2.78
KRH60120	Soybean	nucleus	10.41	2.59
Os01t0672300-01	Rice	nucleus	0.37	0.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	UniProt:A0A0R0KE85	EMBL:ACUP02002346	EnsemblPlantsGene:GLYMA_04G126200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:KRH62715	ProteinID:KRH62715
ProteinID:KRH62715.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0006EDC45F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:16961922..16964139

Molecular Weight (calculated)

30090.6 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.832

Length

269 amino acids

Sequence
(BLAST)

001: MEQPPNLWTF ELQSEENKVS NEKNKKRKLK TPAQLKALEN FYNEHKYPTE EMKLVLAEEL GLTEKQISGW FCHRRLKDKR LMKDEAVANG RQDRSSGVIQ
101: DRGSGLGQDS CGSSKHADHR YLDPKEVESH GLYNHELSVA DMTHGCRNQR LFSQGLDPYD MEPSRHLTPN GALPPLNPKG AINMGHKPSG YLKVKGEIEH
201: AAITAVKKQL GRHYLEDGPL LGIEFDLLPP GAFECQTADP ANEPYSATNP LLLNSPEISA AKRQPSISS

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.