CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99068	Soybean	nucleus	78.17	79.51
KRH62715	Soybean	nucleus	33.77	67.29
KRH73554	Soybean	nucleus	55.78	56.84
KRH14573	Soybean	nucleus	50.56	51.42
VIT_06s0009g03530.t01	Wine grape	nucleus	42.16	42.8
CDY21949	Canola	nucleus	28.92	32.36
AT4G03250.1	Thale cress	nucleus	30.6	32.35
CDY22114	Canola	nucleus	28.36	32.0
Bra034196.1-P	Field mustard	nucleus	28.36	31.87
Solyc12g099760.1.1	Tomato	nucleus	27.61	28.46
PGSC0003DMT400080267	Potato	nucleus	26.68	27.98
Solyc11g065110.1.1	Tomato	nucleus	26.87	27.85
PGSC0003DMT400012008	Potato	nucleus	25.56	26.97
Os01t0672201-00	Rice	nucleus	5.97	11.94
Zm00001d025550_P001	Maize	nucleus	6.72	8.89
KRH41406	Soybean	nucleus	11.75	5.83
KRH60120	Soybean	nucleus	11.75	5.82
KRH20389	Soybean	nucleus	19.03	5.68
KRH50116	Soybean	nucleus	18.84	5.67
KRH21359	Soybean	nucleus	17.72	5.41
KRH55891	Soybean	nucleus	17.72	5.33
Os01t0672300-01	Rice	nucleus	3.17	4.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100811885	MapMan:15.5.3.7	UniProt:A0A0R0J1J7	EMBL:ACUP02005295	EnsemblPlantsGene:GLYMA_08G301700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:KRH45931
ProteinID:KRH45931	ProteinID:KRH45931.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0003DEC8B9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:41962869..41967191

Molecular Weight (calculated)

60477.6 Da

IEP (calculated)

6.596

GRAVY (calculated)

-1.052

Length

536 amino acids

Sequence
(BLAST)

001: MHPSFSMLSL QLKVTELQSE ENKLSMEKNK KRRLKTPAQL KALEDFYNDN KYPTEEMKSE LADELELTEK QISGWFCHRR LKDKKMLNDE VCANGRQDRS
101: SGVIQDRGSG LVQDSCGSTK HVHYRYLDPK EVESHGLYNH GFSAADITYG HKNHRYAEND SATDNTSSES SSSLQDRLLC QGQDPYDMEP SSHVTPNGSL
201: LPPNTKGANN MGHKPSGYLK VKGEIEHAAI TAVKKQLGKH YREDGPLLSV EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS
301: YFTKISSQDS QMVRGDFGSL HDSDFQYKKS HHDINQRRNF QSFTNPLPHK NSCLDFNADS TGEASAYNNT KNCRKGTKHG FDGTRYDSGS NPSDHYEENN
401: LVVNQTDSLL HGYENSNLKN VQRGEYVKSK PSNSVHKSQV YLDTGERRGL NKRMAKEEKF DGDRKIKKQY RDPDEVRVLT NEMTVAKWAK VDPLEQYDVK
501: QSSVAELEPR KSQRSAAEMP SSFSEDETAE TSSSAD

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.