Factsheet for PGSC0003DMT400080267

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065110.1.1	Tomato	nucleus	79.65	78.72
KRH62715	Soybean	nucleus	26.03	49.44
PGSC0003DMT400012008	Potato	nucleus	42.47	42.72
VIT_06s0009g03530.t01	Wine grape	nucleus	32.49	31.44
KRH73554	Soybean	nucleus	30.92	30.04
Bra034196.1-P	Field mustard	nucleus	27.98	29.98
AT4G03250.1	Thale cress	nucleus	29.16	29.39
CDY22114	Canola	nucleus	27.2	29.26
KRH14573	Soybean	nucleus	29.94	29.03
CDY21949	Canola	nucleus	27.2	29.02
KRG99068	Soybean	nucleus	28.57	27.7
KRH45931	Soybean	nucleus	27.98	26.68
Os01t0672201-00	Rice	nucleus	6.65	12.69
Zm00001d025550_P001	Maize	nucleus	6.85	8.64
PGSC0003DMT400002603	Potato	cytosol	6.85	4.07
Os01t0672300-01	Rice	nucleus	2.15	2.63

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102578174	MapMan:15.5.3.7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M1D384	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400031247	PGSC:PGSC0003DMG400031247
EnsemblPlants:PGSC0003DMT400080267	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI000295A7ED	RefSeq:XP_006362312.1	SEG:seg	:	:	:

Description

Homeobox-leucine zipper family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031247]

Coordinates

chr11:+:36472494..36482297

Molecular Weight (calculated)

57623.7 Da

IEP (calculated)

7.311

GRAVY (calculated)

-1.056

Length

511 amino acids

Sequence
(BLAST)

001: MMEDLSEVHS KDDKGQPEKN HKRIIKTRAQ IEALEKLYEE HKYPTDELKA DLAESSGLTE KQISGWFCHR RLKDKRLSNG EIYINGRQDR SSGVIQDHGS
101: GFRQDSCGST KQADDKKFDH REVESRRLTG AEFSTADVAY EAGTHFRGKS ICMDDDSSRS SSSLRNECFS QNAEPYDIAT SRYISQNLPT NFKGVKPKNG
201: PSGYLKVKGQ VENAAITAVK RQLGRHYRLD GPPLGIEFDP LPPGAFESSA PNPVNEPVPA CSPDMSNVYR RSNGFGPNSK SNSHDSDLDG LSFKRKSNST
301: HPEYRFNPKP KLKSSEQNEY PEWNPSLDMY EGSARKMTVD SRDSCKFMAK HGRGEIRTST GSGNGLRNPY VGKVDGEQVK PWFSNRSEVS LAALEKEHLD
401: RKPSDFKGSE YHNFRERELH KIVEKDHISG KRPVVDENSN LVRVKVQVPR HNEITVVQRA PNEVPDHQEY LRRASMIGMP LQTNHQISTA AEKPPSFSED
501: EETEDTSSFE G

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.