CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62715	Soybean	nucleus	39.16	76.58
KRH14573	Soybean	nucleus	73.76	73.62
KRG99068	Soybean	nucleus	59.51	59.39
KRH45931	Soybean	nucleus	56.84	55.78
VIT_06s0009g03530.t01	Wine grape	nucleus	42.97	42.8
AT4G03250.1	Thale cress	nucleus	32.51	33.73
Bra034196.1-P	Field mustard	nucleus	29.28	32.29
CDY21949	Canola	nucleus	29.28	32.15
Solyc11g065110.1.1	Tomato	nucleus	30.42	30.95
CDY22114	Canola	nucleus	27.95	30.95
PGSC0003DMT400080267	Potato	nucleus	30.04	30.92
Solyc12g099760.1.1	Tomato	nucleus	28.14	28.46
PGSC0003DMT400012008	Potato	nucleus	27.19	28.15
Os01t0672201-00	Rice	nucleus	6.84	13.43
Zm00001d025550_P001	Maize	nucleus	7.03	9.14
KRH50116	Soybean	nucleus	19.2	5.67
KRH20389	Soybean	nucleus	19.01	5.57
KRH60120	Soybean	nucleus	11.41	5.55
KRH21359	Soybean	nucleus	18.44	5.53
KRH41406	Soybean	nucleus	11.22	5.46
KRH55891	Soybean	nucleus	17.68	5.22
Os01t0672300-01	Rice	nucleus	2.28	2.87

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100805913	MapMan:15.5.3.7	EMBL:ACUP02001283	EnsemblPlantsGene:GLYMA_02G280300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	UniProt:I1JIY2	InterPro:IPR001356	EnsemblPlants:KRH73554
ProteinID:KRH73554	ProteinID:KRH73554.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000233714B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:46266475..46272098

Molecular Weight (calculated)

59381.1 Da

IEP (calculated)

6.893

GRAVY (calculated)

-1.029

Length

526 amino acids

Sequence
(BLAST)

001: MEESSELQSE ENKVSNEKNK KRKLKTPAQL KALEDFYNEH KYPTEEMKLV LAEELGLTEK QISGWFCHRR LKDKRLMKDE AVANGRQDRS SGVIQDRGSG
101: LGQDSCGSSK HADHRYLDPK EVESHGLYNH ELSVADMTHR RRNHYPENVS GVDDTSSESS SFLQERFSQG QDPYDMEPSR HLTPNGALPP LNPKGAVKMG
201: HKPSGYLKVK GEIEHAAITA VRKQLGRHYL EDGPLLGIEF DPLPPGAFEC QTADTANEPY SVANPLLSNS PEIFAAKRQP SLSSRYDSYY TKFRSQDSHM
301: EGADFGSLHE SDFQDKQDKK ACQNIKQRQS LYGYTNNFPG RNTFPDLYED STGEASAYNS NKSHRMSTKH GVEGMRSDSA SNHSDHYEEK LTVKQKTLML
401: HGYDNINPKN IQRSEHVKSK PSSSIHNSRV PMDTEERGLS ARMAKEEMFK GNRKAKNTYC DVEGAGMLSN EIMVAKRAKV DMLQQYNVKK SPVAEMELKK
501: IQRSVAEMPS SFSEDETADT SSSLDY

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.