CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45931	Soybean	nucleus	79.51	78.17
KRH62715	Soybean	nucleus	33.97	66.54
KRH73554	Soybean	nucleus	59.39	59.51
KRH14573	Soybean	nucleus	55.03	55.03
VIT_06s0009g03530.t01	Wine grape	nucleus	44.02	43.94
CDY21949	Canola	nucleus	29.03	31.94
AT4G03250.1	Thale cress	nucleus	30.55	31.76
Bra034196.1-P	Field mustard	nucleus	27.89	30.82
CDY22114	Canola	nucleus	27.32	30.32
Solyc11g065110.1.1	Tomato	nucleus	28.27	28.82
Solyc12g099760.1.1	Tomato	nucleus	28.27	28.65
PGSC0003DMT400080267	Potato	nucleus	27.7	28.57
PGSC0003DMT400012008	Potato	nucleus	26.19	27.17
Os01t0672201-00	Rice	nucleus	6.07	11.94
Zm00001d025550_P001	Maize	nucleus	7.02	9.14
KRH50116	Soybean	nucleus	19.35	5.72
KRH20389	Soybean	nucleus	19.35	5.68
KRH41406	Soybean	nucleus	11.57	5.64
KRH55891	Soybean	nucleus	18.79	5.56
KRH21359	Soybean	nucleus	18.22	5.47
KRH60120	Soybean	nucleus	11.2	5.45
Os01t0672300-01	Rice	nucleus	2.47	3.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100812697	MapMan:15.5.3.7	EMBL:ACUP02010960	EnsemblPlantsGene:GLYMA_18G118400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	UniProt:I1N144	InterPro:IPR001356	EnsemblPlants:KRG99068
ProteinID:KRG99068	ProteinID:KRG99068.1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00023DA49C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:14647924..14653396

Molecular Weight (calculated)

59637.5 Da

IEP (calculated)

6.217

GRAVY (calculated)

-1.095

Length

527 amino acids

Sequence
(BLAST)

001: MEEATEFHSE ENKLSMEKNK KRRLKTPAQL KGLEDFYNDN KYPTEEMKSE LADELELTEK QISGWFCHRR LKDKKMLNDE VCANGRHDRS SGVIQDRGSG
101: LVQDSCGSTK HVDYRYLDPK EVESHGLYNH GFSAADMMYG HNNHHYTEND SATDNTSSES SSSLQDRLLR QGKDLYDMEP SSHLTPNGSL PPLNIKGANN
201: LGYKPSGYLK VKGDIEHAAI TAVKKQLGKH YREDGPLLTV EFDTIPPEAF ECQIADLANE AYYAANPALP NSPEVSAVKK QSSLSSRYDS YFTKISSQDS
301: HMDRGDFGSL HDSDFQDKKS FQVINQRQNF QSFTNPLPHK NSSLDLNADS TGEASAYNNI KNRRKGTKHG FDGVRYDSAS NPSDHYEENN NLAVKQTDSL
401: LHGYENSNLK NVQRSEYVKS KPSNSVHKSQ IYLDTEERRG LNKRMAKEEK FDGDRKVKKQ YRDPDEVRAL TNEMMVAKRA KVDPLEQYDV KQSSVAELEP
501: RKSQRSAAEM PSSFSEDETA ETSSSAD

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.