CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22114	Canola	nucleus	87.89	88.63
Bra034196.1-P	Field mustard	nucleus	86.43	86.79
AT4G03250.1	Thale cress	nucleus	52.19	49.31
KRH62715	Soybean	nucleus	24.84	44.24
VIT_06s0009g03530.t01	Wine grape	nucleus	35.91	32.58
KRH73554	Soybean	nucleus	32.15	29.28
KRG99068	Soybean	nucleus	31.94	29.03
KRH45931	Soybean	nucleus	32.36	28.92
KRH14573	Soybean	nucleus	31.52	28.65
PGSC0003DMT400080267	Potato	nucleus	29.02	27.2
Solyc11g065110.1.1	Tomato	nucleus	29.02	26.89
PGSC0003DMT400012008	Potato	nucleus	27.77	26.18
Solyc12g099760.1.1	Tomato	nucleus	27.35	25.19
Os01t0672201-00	Rice	nucleus	7.52	13.43
Zm00001d025550_P001	Maize	nucleus	7.1	8.4
CDX90154	Canola	nucleus	21.71	6.61
CDY35748	Canola	nucleus	21.29	6.59
CDY34099	Canola	nucleus	20.67	5.95
CDY65661	Canola	nucleus	20.46	5.86
CDY22305	Canola	nucleus	18.37	5.37
CDX94760	Canola	nucleus	18.16	5.22
CDY60841	Canola	nucleus	10.86	4.99
CDY51255	Canola	nucleus	10.23	4.69
CDX89461	Canola	cytosol, endoplasmic reticulum	4.18	4.15
Os01t0672300-01	Rice	nucleus	2.3	2.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	GO:A0A078G992	UniProt:A0A078G992	EnsemblPlants:CDY21949	ProteinID:CDY21949
ProteinID:CDY21949.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00018279001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0004EE68ED	SEG:seg	:	:	:

Description

BnaC09g00550DBnaC09g00550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G992]

Coordinates

chrLK032126:+:277557..280279

Molecular Weight (calculated)

53566.8 Da

IEP (calculated)

6.939

GRAVY (calculated)

-1.165

Length

479 amino acids

Sequence
(BLAST)

001: MPADGDKHSA ENSKKRKLKT PMQVMALENF YNEHKYPSEE MKAEIAEEIG LTEKQVSGWF CHRRLKDKRS VKEDGNNIGS QDRSSVVLQD RGSVLRQDSC
101: GSTKQTDYWN PKAREVESQR LYDDDGEDST SSERRSSLHK NLVSSKDVES SRYVGRSEHH PQAMRSHGAS KPSGYLKVKG DSENVAITAV KRQLGRQYRE
201: DGPPLGVEFD PLPPGAFEPQ TNNVIVQEPI YVGNQRRSQP PYFTGTRKSF VPGPSYEPAR KPKMLSSDPY SSSEEEEDDD DDDDDMMGGM EPGLGDKQSL
301: REPSFKSPSL SYSNTVPDRK GPPQGVPLTN SKKSHISSKG RAEGSRNNLI DNFHNLSGTS QAHDYDKSIL NGGRKTGYLT KSSNMLPLSG SRSSDSMERD
401: TSSGMVGKYH GEKINHMKMH REKLHSTGEP LVTKRLKHGY PQQVYSETFE RKDQINRSGV ELPSSFNGDE TEESSSSMD

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.