Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62715 | Soybean | nucleus | 28.79 | 56.51 |
| KRG99068 | Soybean | nucleus | 43.94 | 44.02 |
| KRH73554 | Soybean | nucleus | 42.8 | 42.97 |
| KRH45931 | Soybean | nucleus | 42.8 | 42.16 |
| KRH14573 | Soybean | nucleus | 40.91 | 40.99 |
| CDY21949 | Canola | nucleus | 32.58 | 35.91 |
| Bra034196.1-P | Field mustard | nucleus | 31.63 | 35.01 |
| AT4G03250.1 | Thale cress | nucleus | 32.95 | 34.32 |
| CDY22114 | Canola | nucleus | 30.3 | 33.68 |
| PGSC0003DMT400080267 | Potato | nucleus | 31.44 | 32.49 |
| Solyc11g065110.1.1 | Tomato | nucleus | 31.44 | 32.11 |
| Solyc12g099760.1.1 | Tomato | nucleus | 30.3 | 30.77 |
| PGSC0003DMT400012008 | Potato | nucleus | 28.98 | 30.12 |
| VIT_12s0028g03080.t01 | Wine grape | nucleus | 6.82 | 15.45 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 12.5 | 9.24 |
| VIT_07s0005g06050.t01 | Wine grape | extracellular | 3.03 | 6.04 |
| VIT_19s0085g00350.t01 | Wine grape | nucleus | 11.36 | 5.06 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 10.98 | 3.81 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 7.2 | 3.39 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100265339 | wikigene:100265339 | MapMan:15.5.3.7 | ProteinID:CCB49041 | ProteinID:CCB49041.1 |
| UniProt:F6HA21 | EMBL:FN595504 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | EntrezGene:LOC100265339 | wikigene:LOC100265339 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF489 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00021095A6 | ArrayExpress:VIT_06s0009g03530 | EnsemblPlantsGene:VIT_06s0009g03530 |
| EnsemblPlants:VIT_06s0009g03530.t01 | unigene:Vvi.17011 | RefSeq:XP_002279963 | RefSeq:XP_002279963.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr6:+:16796574..16815691
Molecular Weight (calculated)
59906.1 Da
IEP (calculated)
5.999
GRAVY (calculated)
-1.124
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESSEVHSE ENKICEEKNK KRRLKTPSQV QALEKFYNEH KYPTESMKSE LAEEIGLTEK QISGWFCHRR LKDKKLLEDE AGANGRQDRS SGVIQDRGSG
101: YRQDSCGSTK HGDYRHIDPR EVESRRFYGQ EFSAGDLNYE HRSHYTGNFS GRGDTSSESS SDLQDRFFPQ NEDPFDVETS KLPTRSGIVM PINTKGTQNR
201: GFVRPSGYLK VKGEIENVAI TAVKRQLGRH YREDGPPLGV EFQPLPPGAF ESSIRDQDDE PYYVGNSIMS QSPDNPGVPK PPSLSTRYEV CSSKLASQNS
301: CMEEANFGTM HGFDSRDNYS NRQLKQKGSF PNYSNLSPGW NFSKDMHEDA AGETSFVNSN KNYEMRSNPG IEGMRLSSVS NRRLHPYGGK VTSEQTDSWL
401: HEYDDIRPKI VQQKEYLKSK PSNLILQQSG SCDDEGRGQL RNMAKMEEVC RERRAMREYS DPVGEKVQPT NEMRVAKRVR DESPPLDYAK KSSFSETPTW
501: GNQIKGSAME MPSSFSEDET AETSSSMD
101: YRQDSCGSTK HGDYRHIDPR EVESRRFYGQ EFSAGDLNYE HRSHYTGNFS GRGDTSSESS SDLQDRFFPQ NEDPFDVETS KLPTRSGIVM PINTKGTQNR
201: GFVRPSGYLK VKGEIENVAI TAVKRQLGRH YREDGPPLGV EFQPLPPGAF ESSIRDQDDE PYYVGNSIMS QSPDNPGVPK PPSLSTRYEV CSSKLASQNS
301: CMEEANFGTM HGFDSRDNYS NRQLKQKGSF PNYSNLSPGW NFSKDMHEDA AGETSFVNSN KNYEMRSNPG IEGMRLSSVS NRRLHPYGGK VTSEQTDSWL
401: HEYDDIRPKI VQQKEYLKSK PSNLILQQSG SCDDEGRGQL RNMAKMEEVC RERRAMREYS DPVGEKVQPT NEMRVAKRVR DESPPLDYAK KSSFSETPTW
501: GNQIKGSAME MPSSFSEDET AETSSSMD
001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.