Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 48.44 | 35.63 |
| Os05t0562400-01 | Rice | nucleus | 42.64 | 34.22 |
| Zm00001d043914_P001 | Maize | nucleus | 16.24 | 32.33 |
| OQU75646 | Sorghum | cytosol | 16.41 | 31.89 |
| KRH21359 | Soybean | nucleus | 48.8 | 31.17 |
| KRH50116 | Soybean | nucleus | 48.35 | 30.42 |
| Solyc02g077660.2.1 | Tomato | nucleus | 44.69 | 29.86 |
| KRH20389 | Soybean | nucleus | 47.73 | 29.79 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 45.58 | 28.82 |
| Bra010869.1-P | Field mustard | nucleus | 38.0 | 27.13 |
| CDY35748 | Canola | nucleus | 37.2 | 26.94 |
| CDX90154 | Canola | nucleus | 37.56 | 26.76 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 45.32 | 26.61 |
| KXG33083 | Sorghum | nucleus | 42.19 | 25.95 |
| Bra032908.1-P | Field mustard | nucleus | 38.45 | 25.93 |
| CDY34099 | Canola | nucleus | 38.45 | 25.89 |
| CDY65661 | Canola | nucleus | 38.54 | 25.84 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 41.84 | 25.6 |
| AT1G28420.1 | Thale cress | nucleus | 38.89 | 25.57 |
| KXG33081 | Sorghum | nucleus | 41.93 | 25.52 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 41.75 | 25.3 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 41.66 | 25.18 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 41.39 | 25.16 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 41.57 | 25.13 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 41.39 | 24.99 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 41.21 | 24.8 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 40.86 | 24.73 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 40.86 | 24.64 |
| Zm00001d011560_P012 | Maize | nucleus | 40.41 | 24.34 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 40.41 | 24.13 |
| VIT_07s0005g06050.t01 | Wine grape | extracellular | 5.35 | 22.64 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 45.32 | 22.64 |
| Zm00001d043915_P002 | Maize | nucleus | 24.62 | 21.72 |
| VIT_19s0085g00350.t01 | Wine grape | nucleus | 16.41 | 15.53 |
| VIT_06s0009g03530.t01 | Wine grape | nucleus | 3.39 | 7.2 |
| VIT_12s0028g03080.t01 | Wine grape | nucleus | 0.8 | 3.86 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 2.14 | 3.36 |
Protein Annotations
| EntrezGene:100247033 | wikigene:100247033 | MapMan:15.5.3.7 | ProteinID:CCB55624 | ProteinID:CCB55624.1 | ncoils:Coil |
| UniProt:F6HM36 | EMBL:FN595992 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004713 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0018108 | GO:GO:0019538 | GO:GO:0045892 |
| GO:GO:0048510 | InterPro:HB1/Asxl_HTH | EntrezGene:LOC100247033 | wikigene:LOC100247033 | PFAM:PF05066 | PFAM:PF15612 |
| PFAM:PF15613 | PANTHER:PTHR36968 | UniParc:UPI0002109E52 | ArrayExpress:VIT_10s0003g00270 | EnsemblPlantsGene:VIT_10s0003g00270 | EnsemblPlants:VIT_10s0003g00270.t01 |
| InterPro:WHIM1_dom | InterPro:WHIM2_dom | RefSeq:XP_002273559 | RefSeq:XP_002273559.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr10:-:1561823..1570135
Molecular Weight (calculated)
124045.0 Da
IEP (calculated)
5.335
GRAVY (calculated)
-0.698
Length
1121 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNWRSPPGAP SGMVGVGKIG RREISPENFA GKFASGEWFL TTIRLTGKYW EMGKIKGCED IVSTLRNGSA AVNAVAIMKG KGFSLSRRSR HRLTPGTVKF
0101: AVFHVLSLEG SKGLTILELA DKIQKSGLRD LTRSKAPEAS ISAALSRDAA LFERTAPCTY CVRPTFRKDP ADAEKVLSAA REKVHVFENG FLAGEDVDDV
0201: ERDDDSECDV AEGPEVDDLG TPSNANKNTI HLNNGGSTCS GNGKENACND VINPQNEVVK DFSSPLSSGT KVTTTASITL NQYGAGNPDQ ENVEIDESNS
0301: GEPWVQGLAE GEYSDLSVEE RLNALVALIG VANEGNTIRA VLEDRLEAAI ALKKQMWAEA QLDKKRLKEE NITKVQYTSC IASKADMKPT SAAAEGSQSP
0401: LPVDNKNNEA SLNTAVGQKP SVSSHNVQNH LSTLPTEGTS IVQESTVPNN FISQHGYDAE RSRLQLKSYI AHRAEDVYVY RSLPLGQDRR RNRYWQFVAS
0501: ASRNDPGSGR IFVELHDGYW RLINSEEAFD ALITSLDTRG IRESHLHAML QKIEMAFKEN VRRNSQCVDN VGQTRTTVKN ENTETDSNPD CIAGFDSPNS
0601: TVCGLVSDAL EPLSSFGIEL GRNEMEKRAT LKRYQDFQKW MWKECFNSEA LCSMKYGKKR CAQLLSICDF CFECYFNEDN HCPSCHRTFG SFDNNVHFLE
0701: HVIQCENKKK TNPEDLHISD SSLPLGIRLL KALLAFIEVS IPLDALESFW MEGYQRETWG MKIQTSSSIE DLLQIVTLLE GVIKQDRLST EFRTTKELLG
0801: SCTSSGNAVY DSAYTGSVPV LAWIPQTTAA VAVRLLELDA SISYIHHDKS QCHDDKKELG EFRKFPSRYA PVKNAQEVEI SGFPQDIHKK EENWTDLGNG
0901: RDSSRHGQRG RGRGRGRLHG EKWQRRVSSS RPHTGKHNAR DNPNLNQRRG LQDRRTREQE SQGQGCRRGP RTVRRRADKR AVKGTPLGHL GDMVRPKGKG
1001: ESHRNLIGEG WGKFTMMQMD NADNHSSGDT VESDDNAPEM EHEHGSWGLG FDGVSGGQTG DLMEVSDEDA EGSEDDNGSE EEGDDDNSED ANMNECSDGL
1101: VNGVGNEDLG TEYATSEDYS D
0101: AVFHVLSLEG SKGLTILELA DKIQKSGLRD LTRSKAPEAS ISAALSRDAA LFERTAPCTY CVRPTFRKDP ADAEKVLSAA REKVHVFENG FLAGEDVDDV
0201: ERDDDSECDV AEGPEVDDLG TPSNANKNTI HLNNGGSTCS GNGKENACND VINPQNEVVK DFSSPLSSGT KVTTTASITL NQYGAGNPDQ ENVEIDESNS
0301: GEPWVQGLAE GEYSDLSVEE RLNALVALIG VANEGNTIRA VLEDRLEAAI ALKKQMWAEA QLDKKRLKEE NITKVQYTSC IASKADMKPT SAAAEGSQSP
0401: LPVDNKNNEA SLNTAVGQKP SVSSHNVQNH LSTLPTEGTS IVQESTVPNN FISQHGYDAE RSRLQLKSYI AHRAEDVYVY RSLPLGQDRR RNRYWQFVAS
0501: ASRNDPGSGR IFVELHDGYW RLINSEEAFD ALITSLDTRG IRESHLHAML QKIEMAFKEN VRRNSQCVDN VGQTRTTVKN ENTETDSNPD CIAGFDSPNS
0601: TVCGLVSDAL EPLSSFGIEL GRNEMEKRAT LKRYQDFQKW MWKECFNSEA LCSMKYGKKR CAQLLSICDF CFECYFNEDN HCPSCHRTFG SFDNNVHFLE
0701: HVIQCENKKK TNPEDLHISD SSLPLGIRLL KALLAFIEVS IPLDALESFW MEGYQRETWG MKIQTSSSIE DLLQIVTLLE GVIKQDRLST EFRTTKELLG
0801: SCTSSGNAVY DSAYTGSVPV LAWIPQTTAA VAVRLLELDA SISYIHHDKS QCHDDKKELG EFRKFPSRYA PVKNAQEVEI SGFPQDIHKK EENWTDLGNG
0901: RDSSRHGQRG RGRGRGRLHG EKWQRRVSSS RPHTGKHNAR DNPNLNQRRG LQDRRTREQE SQGQGCRRGP RTVRRRADKR AVKGTPLGHL GDMVRPKGKG
1001: ESHRNLIGEG WGKFTMMQMD NADNHSSGDT VESDDNAPEM EHEHGSWGLG FDGVSGGQTG DLMEVSDEDA EGSEDDNGSE EEGDDDNSED ANMNECSDGL
1101: VNGVGNEDLG TEYATSEDYS D
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.