Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G245800.2 | Wheat | nucleus | 98.38 | 98.33 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 97.3 | 97.51 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 95.74 | 96.26 |
| Zm00001d043915_P002 | Maize | nucleus | 52.8 | 77.03 |
| KXG33081 | Sorghum | nucleus | 75.78 | 76.28 |
| KXG33083 | Sorghum | nucleus | 74.33 | 75.59 |
| Zm00001d011560_P012 | Maize | nucleus | 74.06 | 73.78 |
| Zm00001d043914_P001 | Maize | nucleus | 21.36 | 70.34 |
| OQU75646 | Sorghum | cytosol | 21.79 | 70.02 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 63.81 | 63.64 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 54.05 | 56.51 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 57.28 | 55.63 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 19.85 | 51.54 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 42.13 | 51.25 |
| Solyc07g053610.2.1 | Tomato | nucleus | 44.01 | 45.79 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 54.58 | 45.1 |
| KRH21359 | Soybean | nucleus | 42.07 | 44.44 |
| KRH55891 | Soybean | nucleus | 41.86 | 43.57 |
| CDY22305 | Canola | nucleus | 38.35 | 43.38 |
| Bra033725.1-P | Field mustard | nucleus | 38.24 | 43.23 |
| AT5G44180.1 | Thale cress | nucleus | 39.37 | 43.09 |
| KRH50116 | Soybean | nucleus | 41.26 | 42.93 |
| CDY35748 | Canola | nucleus | 35.71 | 42.76 |
| KRH20389 | Soybean | nucleus | 41.42 | 42.76 |
| CDX94760 | Canola | nucleus | 38.3 | 42.62 |
| Bra010869.1-P | Field mustard | nucleus | 36.03 | 42.55 |
| CDX90154 | Canola | nucleus | 36.03 | 42.47 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 25.13 | 41.57 |
| AT1G28420.1 | Thale cress | nucleus | 38.03 | 41.35 |
| Solyc02g077660.2.1 | Tomato | nucleus | 37.16 | 41.06 |
| Bra032908.1-P | Field mustard | nucleus | 36.52 | 40.73 |
| CDY34099 | Canola | nucleus | 36.46 | 40.6 |
| CDY65661 | Canola | nucleus | 36.25 | 40.19 |
| TraesCS3A01G112300.2 | Wheat | nucleus | 14.13 | 24.1 |
| TraesCS2A01G124800.1 | Wheat | nucleus | 14.13 | 24.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | ncoils:Coil | InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR018501 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 | PFAM:PF15612 |
| PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | SMART:SM00389 | SMART:SM00571 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS3A01G245700 | EnsemblPlants:TraesCS3A01G245700.2 | InterPro:WHIM1_dom | InterPro:WHIM2_dom | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:460811425..460824851
Molecular Weight (calculated)
206661.0 Da
IEP (calculated)
5.103
GRAVY (calculated)
-0.816
Length
1854 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDAAGAGDGP PREAPEERTP QTPAPPAVAA PASASGGAAG PSGSGEKPVK RMMKTPYQLD VLEQTYLAEQ YPSEAMRAEL SVKIGLSDRQ LQMWFCHRRL
0101: KDRKPPAKRQ RRDEEGPATP VPVPPPVLPL QAMPLASTDL MMSAGSPYDE PLLPLAHSRR GAGRSSAVPR ISAPDIGRDI GRRYYEPLPV MLPPPVAPMQ
0201: FRQAELRVIT SVESQLGEPL REDGPVLGVD FDPLPPGAFG APIVPEQQKQ PVRSYDAKIF SRHDPNLLKV SSFLPSMEHP FVPNSFAGKR KSTVGNPPPQ
0301: VHPHGGSRAV HEYQFLPEQP SDTYERASRS HYYDTPVEAS NSRIPSLTPG PHLLHGSEDM VPGYAFEGQG LLPQSGRPQV FPAVSTDYEM NQSNSNINSV
0401: PVDGQFGSSH VAGFEDPLIS SETRAYHDED ASRVDRKRKH NEEAKIAKEV EAHEKRIRKE LEKQDILRRK REEQMRKEME RHDRERRKEE ERLLRERQRE
0501: EERFQREQRR EHERMEKFLQ KQSRRAEKQR QKEELRKEKE MARQKAANER ATARRIAREY MELVEDERLE LMELAAQSKG LPSMLCLDSD TLQQLDSFRG
0601: MLSQFPPEMV RLKVPLSIKP WTGSEESVGK LLMVWKFLIT FADVLELSSV TLDEFIQSLH DYDSRLLGEL HVALLKSIIK DIEDVARTPS VALGVNPGGG
0701: HPQIVEGAYS WGFNIRNWQR HLNLLTWPEI LRQFALSAGF GPQLKKRNAE DVFYRDENEG QDGQNVISAL RNGSAAVRAA ALMKERGYTH RRSRHRLTPG
0801: TVKFAAFHVL SLEDSSGLTI LEVAEKIQKS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVKSPY RKDPADSEPV LSAAREKIRA FQNVLSDSEA
0901: EKEVDDVDRD EESDCDDDPD GDDVNIEVGD EKDPLLAVKA QGVVPTATKV GEVKGDPDGL GAALTRPISS TTSRKDIAML SLGDSSAVGT SSVSPLRASS
1001: DHPEVITGDA EDTQIDESNQ GESWVQGLAE GDYCDLSVEE RLNALVALVG VATEGNSIRA VLEERLEAAN AIKKQMWAEA QLDKRRSKEE FASKVQYNSY
1101: TSLKADVIPE NNATETTPTP VRNLDIDNDE NAGTSNNNEI LNQQSNAGNA SYERNGTGQE TSATPDNLSA QQYAYADKTR SQLKSYIGHR AEQLYVYRSL
1201: PLGQDRRRNR YWQFSTSTSP NDPGSGRIFF ESREGYWRVI DSEEVFDALV ASLDTRGSRE AQLHSMLQRV ESTFKEGIKR KQGAAIEQSA GRYLKNGATD
1301: TMRASYRSEF GSPSSTLSSV SADSATTYSD SFKIELGRND VEKISISKRA DSFLKWMWSE CCDRQLTCAM KYGKKRCSAL MHSCNYCYQI YLAEERHCSS
1401: CHKTFKSIYN YSEHTSQCEE KRRTDPNWKM QIADYSVPIG MRLLKLQLAT IEASIPSEAL QPFWSDGYRK SWGVKLHSTT SVVEIFQMLT LLEGAIRRDY
1501: LSSDFETSNE LLNNSKTEDM PSQNPSSSPG TSVLPWVPDT TAAITLRMLD LDYAVSYVQN QKKERDGGDS MKLASRYTVV KKAQDIEPLE PTGFDLYDAR
1601: GPPSSGRRGR GRGSRGGSRG GRGRNRGGRI PRGISSSSRI EFMDEDAAYE KAPRKNARRG RGRGRGRGRG RRTVRPRQPL SEGRGRSIPK AHLLGSFSML
1701: SNVKPSAVEE SPRSSGAEEW GLESRRPYIQ GEGDENSSGS ESDQSEDNGE NGQPMDEEYE EEQVPDYSRA YSGGLRPLAH VMMDDETEDD DEDAEGDGEG
1801: DEEEYDVNHA SADVDDEMDE DDDIGDDGDD GGDGVEVNAD EDEGATSYSS EYSE
0101: KDRKPPAKRQ RRDEEGPATP VPVPPPVLPL QAMPLASTDL MMSAGSPYDE PLLPLAHSRR GAGRSSAVPR ISAPDIGRDI GRRYYEPLPV MLPPPVAPMQ
0201: FRQAELRVIT SVESQLGEPL REDGPVLGVD FDPLPPGAFG APIVPEQQKQ PVRSYDAKIF SRHDPNLLKV SSFLPSMEHP FVPNSFAGKR KSTVGNPPPQ
0301: VHPHGGSRAV HEYQFLPEQP SDTYERASRS HYYDTPVEAS NSRIPSLTPG PHLLHGSEDM VPGYAFEGQG LLPQSGRPQV FPAVSTDYEM NQSNSNINSV
0401: PVDGQFGSSH VAGFEDPLIS SETRAYHDED ASRVDRKRKH NEEAKIAKEV EAHEKRIRKE LEKQDILRRK REEQMRKEME RHDRERRKEE ERLLRERQRE
0501: EERFQREQRR EHERMEKFLQ KQSRRAEKQR QKEELRKEKE MARQKAANER ATARRIAREY MELVEDERLE LMELAAQSKG LPSMLCLDSD TLQQLDSFRG
0601: MLSQFPPEMV RLKVPLSIKP WTGSEESVGK LLMVWKFLIT FADVLELSSV TLDEFIQSLH DYDSRLLGEL HVALLKSIIK DIEDVARTPS VALGVNPGGG
0701: HPQIVEGAYS WGFNIRNWQR HLNLLTWPEI LRQFALSAGF GPQLKKRNAE DVFYRDENEG QDGQNVISAL RNGSAAVRAA ALMKERGYTH RRSRHRLTPG
0801: TVKFAAFHVL SLEDSSGLTI LEVAEKIQKS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVKSPY RKDPADSEPV LSAAREKIRA FQNVLSDSEA
0901: EKEVDDVDRD EESDCDDDPD GDDVNIEVGD EKDPLLAVKA QGVVPTATKV GEVKGDPDGL GAALTRPISS TTSRKDIAML SLGDSSAVGT SSVSPLRASS
1001: DHPEVITGDA EDTQIDESNQ GESWVQGLAE GDYCDLSVEE RLNALVALVG VATEGNSIRA VLEERLEAAN AIKKQMWAEA QLDKRRSKEE FASKVQYNSY
1101: TSLKADVIPE NNATETTPTP VRNLDIDNDE NAGTSNNNEI LNQQSNAGNA SYERNGTGQE TSATPDNLSA QQYAYADKTR SQLKSYIGHR AEQLYVYRSL
1201: PLGQDRRRNR YWQFSTSTSP NDPGSGRIFF ESREGYWRVI DSEEVFDALV ASLDTRGSRE AQLHSMLQRV ESTFKEGIKR KQGAAIEQSA GRYLKNGATD
1301: TMRASYRSEF GSPSSTLSSV SADSATTYSD SFKIELGRND VEKISISKRA DSFLKWMWSE CCDRQLTCAM KYGKKRCSAL MHSCNYCYQI YLAEERHCSS
1401: CHKTFKSIYN YSEHTSQCEE KRRTDPNWKM QIADYSVPIG MRLLKLQLAT IEASIPSEAL QPFWSDGYRK SWGVKLHSTT SVVEIFQMLT LLEGAIRRDY
1501: LSSDFETSNE LLNNSKTEDM PSQNPSSSPG TSVLPWVPDT TAAITLRMLD LDYAVSYVQN QKKERDGGDS MKLASRYTVV KKAQDIEPLE PTGFDLYDAR
1601: GPPSSGRRGR GRGSRGGSRG GRGRNRGGRI PRGISSSSRI EFMDEDAAYE KAPRKNARRG RGRGRGRGRG RRTVRPRQPL SEGRGRSIPK AHLLGSFSML
1701: SNVKPSAVEE SPRSSGAEEW GLESRRPYIQ GEGDENSSGS ESDQSEDNGE NGQPMDEEYE EEQVPDYSRA YSGGLRPLAH VMMDDETEDD DEDAEGDGEG
1801: DEEEYDVNHA SADVDDEMDE DDDIGDDGDD GGDGVEVNAD EDEGATSYSS EYSE
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.