Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 45.85 | 53.61 |
| Zm00001d043915_P002 | Maize | nucleus | 35.47 | 49.72 |
| KRH55891 | Soybean | nucleus | 47.25 | 47.28 |
| Bra033725.1-P | Field mustard | nucleus | 42.54 | 46.22 |
| CDY22305 | Canola | nucleus | 42.31 | 46.0 |
| CDX94760 | Canola | nucleus | 42.59 | 45.56 |
| AT5G44180.1 | Thale cress | nucleus | 43.15 | 45.4 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 44.44 | 44.67 |
| Os05t0562400-01 | Rice | nucleus | 35.02 | 44.67 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 45.85 | 44.16 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 45.85 | 44.04 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 45.79 | 44.01 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 45.4 | 43.87 |
| KXG33081 | Sorghum | nucleus | 45.01 | 43.54 |
| KXG33083 | Sorghum | nucleus | 44.39 | 43.39 |
| Solyc02g077660.2.1 | Tomato | nucleus | 40.46 | 42.97 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 45.62 | 42.59 |
| Zm00001d011560_P012 | Maize | nucleus | 44.11 | 42.24 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 43.49 | 41.6 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 43.32 | 41.57 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 43.1 | 41.47 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 42.59 | 41.43 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 42.93 | 41.15 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 42.93 | 40.76 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 45.45 | 36.1 |
| Zm00001d043914_P001 | Maize | nucleus | 8.98 | 28.42 |
| OQU75646 | Sorghum | cytosol | 8.81 | 27.21 |
| Solyc11g006200.1.1 | Tomato | nucleus | 14.7 | 24.26 |
| Solyc11g065110.1.1 | Tomato | nucleus | 5.27 | 18.18 |
| Solyc12g099760.1.1 | Tomato | nucleus | 4.38 | 15.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | ncoils:Coil | InterPro:DDT_dom | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0043565 |
| GO:GO:0045892 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 |
| UniProt:K4CFQ6 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 | PFAM:PF15612 | PFAM:PF15613 |
| PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | SMART:SM00389 | SMART:SM00571 | SUPFAM:SSF46689 |
| EnsemblPlantsGene:Solyc07g053610.2 | EnsemblPlants:Solyc07g053610.2.1 | UniParc:UPI000276C00D | InterPro:WHIM1_dom | InterPro:WHIM2_dom | SEG:seg |
Description
Homeobox-DDT domain protein RLT2 [Source:Projected from Arabidopsis thaliana (AT5G44180) UniProtKB/Swiss-Prot;Acc:Q9FFH1]
Coordinates
chr7:+:62033451..62049779
Molecular Weight (calculated)
201327.0 Da
IEP (calculated)
5.346
GRAVY (calculated)
-0.753
Length
1782 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESDGGGNGE ADVPMAVAAA ATSDAGVNGS CDAGKKKVPE GEPKVKRKMK TASQLEILEK TYATDTYPSE ALRAELSVKL GLSDRQLQMW FCHRRLKDRK
0101: ATPVKRQKKE EVSPAAMISS GGQGDEMAVS GEIGKDHVSG SGSRASPIGL MDLQVQQQLH QRVVHRPGTA VPRFRPEMPT LKRYYEPPQA ISELRAIAFV
0201: EAQLGEPLRE DGPILGMEFD PLPPGAFGAP IVAAMQHKPA GRPFEAQIYE RPDVNAIKGT TRTLREYQFL PEQPSNRSDS YEQSVPSHHY RSTEVQSTRA
0301: ILSTGRSFIH GSEQVASGCS IPGLIPTLNL LPQGRQGHIS PASAEVEAVP QRSLVNIEVE ASYSGQPMMA LESPFMSSDK RVIHDEERLE RKRKSEEARI
0401: AREVEAHEKR IRKELEKQDM LQRKREEQMR KDMERQDRER RKEEERLLRE KLREEERYQR EQRREMERRQ KFLQKESMKA ERMRLKEEMR REKEVARLKA
0501: ANVRANARRI AKESTELIED ERLELMELAA SKKGSPSTLS LDSETLQNLE AFRDLLNEFP PKSVCLRKPF EVEPWTCSEE DVGNLFMVWR FLITFSDVLH
0601: LWPFTLDEFV QAFHDYDPRL LAEIHIALLK LIIKDIEDVA RTPASAVGAN PNVNPGGGHP DIVEGAYAWG FDIRSWQSHL NALTWPEILR QFALSAGFGP
0701: KLKKQSVEPA YPRDENECNN GADIISNLRS GVAAEKAVAK MQERGFSNLR RSRHRLTPGT VKFAAFHVLS LEGSKGLNIL DVAEKIQKSG LRDLRTSKTP
0801: EASISAALSR DTKLFERTAP STYCVRDPYR KDPGDANAIL SAAREKIRMF KNEYVNGEET EDVEKEVERD DEFESDAADD PEVDDLVSEL KFAETPETQK
0901: IDRTDGRSSS FDLTQTPEDL CMQNSTAMMH SVNFGELKAT AGDQSTASGV EAVNLDQEDT VIDENNAGQR WVQGLMEGEY SDLTVEERLH ALVALIGIAN
1001: EGNSVRLILE ERLEAASALK KQIWAEAQLD KRRFKEEFLL KVQYPSVRSN TEQICSVTSM EARQSPLHAV GHNEVADIPS LQQEAMHKLP DEPNNPSNVA
1101: VEKTCQMQET YGGQDNSQPQ HFAYVAEKSR SQLKAYIGHR AEETFVYRSL PLGQDRRRNR YWQFITSPSR NDPGSGRIFV ELRDGRWRLI DSEKDFNCLM
1201: ASLDIRGIRE SHLHSMLQNI EATFKATVRK HKYTEVELDD SVKEHTSETV PSIDYCSNTG GSKSTICLSN QETSEPSTSF LLGFGRNKME DSDALRRYAD
1301: LEKWMWEECV HPQFLCARKY GRMRCENLIS TCNNCHDTYF LEDKHCPSCH RTFSPTKSSY FLEHVALCKE KLEDLFWPLC IMDSLPPLRV RLLRAQLASV
1401: EACIPPEALQ PVWSELYRRS WGTKLHIASA AGDLLQILTL LEGAIKREYL ISNYETTNEL LGAVSNSNLD GMVAVLPWVP HTTSAVALRL MELDCSLCYT
1501: QQQKAESLKD EESADFTMFK TNYAQVKRAT RVISAEAREY EKLEPDYSVK VGSGHANSGQ GRNRVRGGAH CRVHGGKSQR KVNASRSDSA QRSSTKNSDR
1601: LGHLPAWKGQ DRGKGRRKRG RRSVRNRQKP VKNVEEVSPE EVPITSQQDW NDVEDEETPQ FEAPDNDSDS GTSGSEDYKG QTTVNDYEDL MVADYGSFSG
1701: RNDHASTSVS YNISQRYTET AEDGIGDYED DHDEEDEEDG LANKNVQRYF DGESDDEGDR FMDEDLVETP NKDSESSSEY SD
0101: ATPVKRQKKE EVSPAAMISS GGQGDEMAVS GEIGKDHVSG SGSRASPIGL MDLQVQQQLH QRVVHRPGTA VPRFRPEMPT LKRYYEPPQA ISELRAIAFV
0201: EAQLGEPLRE DGPILGMEFD PLPPGAFGAP IVAAMQHKPA GRPFEAQIYE RPDVNAIKGT TRTLREYQFL PEQPSNRSDS YEQSVPSHHY RSTEVQSTRA
0301: ILSTGRSFIH GSEQVASGCS IPGLIPTLNL LPQGRQGHIS PASAEVEAVP QRSLVNIEVE ASYSGQPMMA LESPFMSSDK RVIHDEERLE RKRKSEEARI
0401: AREVEAHEKR IRKELEKQDM LQRKREEQMR KDMERQDRER RKEEERLLRE KLREEERYQR EQRREMERRQ KFLQKESMKA ERMRLKEEMR REKEVARLKA
0501: ANVRANARRI AKESTELIED ERLELMELAA SKKGSPSTLS LDSETLQNLE AFRDLLNEFP PKSVCLRKPF EVEPWTCSEE DVGNLFMVWR FLITFSDVLH
0601: LWPFTLDEFV QAFHDYDPRL LAEIHIALLK LIIKDIEDVA RTPASAVGAN PNVNPGGGHP DIVEGAYAWG FDIRSWQSHL NALTWPEILR QFALSAGFGP
0701: KLKKQSVEPA YPRDENECNN GADIISNLRS GVAAEKAVAK MQERGFSNLR RSRHRLTPGT VKFAAFHVLS LEGSKGLNIL DVAEKIQKSG LRDLRTSKTP
0801: EASISAALSR DTKLFERTAP STYCVRDPYR KDPGDANAIL SAAREKIRMF KNEYVNGEET EDVEKEVERD DEFESDAADD PEVDDLVSEL KFAETPETQK
0901: IDRTDGRSSS FDLTQTPEDL CMQNSTAMMH SVNFGELKAT AGDQSTASGV EAVNLDQEDT VIDENNAGQR WVQGLMEGEY SDLTVEERLH ALVALIGIAN
1001: EGNSVRLILE ERLEAASALK KQIWAEAQLD KRRFKEEFLL KVQYPSVRSN TEQICSVTSM EARQSPLHAV GHNEVADIPS LQQEAMHKLP DEPNNPSNVA
1101: VEKTCQMQET YGGQDNSQPQ HFAYVAEKSR SQLKAYIGHR AEETFVYRSL PLGQDRRRNR YWQFITSPSR NDPGSGRIFV ELRDGRWRLI DSEKDFNCLM
1201: ASLDIRGIRE SHLHSMLQNI EATFKATVRK HKYTEVELDD SVKEHTSETV PSIDYCSNTG GSKSTICLSN QETSEPSTSF LLGFGRNKME DSDALRRYAD
1301: LEKWMWEECV HPQFLCARKY GRMRCENLIS TCNNCHDTYF LEDKHCPSCH RTFSPTKSSY FLEHVALCKE KLEDLFWPLC IMDSLPPLRV RLLRAQLASV
1401: EACIPPEALQ PVWSELYRRS WGTKLHIASA AGDLLQILTL LEGAIKREYL ISNYETTNEL LGAVSNSNLD GMVAVLPWVP HTTSAVALRL MELDCSLCYT
1501: QQQKAESLKD EESADFTMFK TNYAQVKRAT RVISAEAREY EKLEPDYSVK VGSGHANSGQ GRNRVRGGAH CRVHGGKSQR KVNASRSDSA QRSSTKNSDR
1601: LGHLPAWKGQ DRGKGRRKRG RRSVRNRQKP VKNVEEVSPE EVPITSQQDW NDVEDEETPQ FEAPDNDSDS GTSGSEDYKG QTTVNDYEDL MVADYGSFSG
1701: RNDHASTSVS YNISQRYTET AEDGIGDYED DHDEEDEEDG LANKNVQRYF DGESDDEGDR FMDEDLVETP NKDSESSSEY SD
0001: MEGGSEKTTP EGCGGESKSK RKMKTAAQLE VLENTYSAEP YPSEAIRADL SVKLNLSDRQ LQMWFCHRRL KERKSTTPSK RQRKELVTPT AMESWEPPVN
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
Arabidopsis Description
RLT2Homeobox-DDT domain protein RLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.