Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G403700.1 | Wheat | nucleus | 96.46 | 97.03 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 95.06 | 95.27 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 92.65 | 92.95 |
| Os05t0562400-01 | Rice | nucleus | 56.2 | 74.95 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 65.49 | 66.59 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 63.39 | 63.84 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 61.3 | 60.84 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 49.87 | 52.4 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 53.09 | 51.81 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 40.1 | 49.02 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 18.52 | 48.32 |
| KRH21359 | Soybean | nucleus | 41.17 | 43.7 |
| Solyc07g053610.2.1 | Tomato | nucleus | 41.6 | 43.49 |
| KRH20389 | Soybean | nucleus | 41.12 | 42.65 |
| CDY35748 | Canola | nucleus | 35.32 | 42.51 |
| AT5G44180.1 | Thale cress | nucleus | 38.59 | 42.44 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 51.1 | 42.42 |
| KRH50116 | Soybean | nucleus | 40.31 | 42.14 |
| CDY22305 | Canola | nucleus | 36.98 | 42.04 |
| Bra033725.1-P | Field mustard | nucleus | 36.98 | 42.01 |
| Bra010869.1-P | Field mustard | nucleus | 35.21 | 41.78 |
| KRH55891 | Soybean | nucleus | 39.83 | 41.66 |
| CDX90154 | Canola | nucleus | 35.16 | 41.64 |
| CDX94760 | Canola | nucleus | 37.09 | 41.48 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 24.8 | 41.21 |
| AT1G28420.1 | Thale cress | nucleus | 37.57 | 41.06 |
| Solyc02g077660.2.1 | Tomato | nucleus | 36.88 | 40.94 |
| Bra032908.1-P | Field mustard | nucleus | 36.39 | 40.79 |
| CDY34099 | Canola | nucleus | 36.39 | 40.72 |
| CDY65661 | Canola | nucleus | 36.34 | 40.49 |
| TraesCS2B01G147300.4 | Wheat | nucleus | 13.74 | 23.44 |
| TraesCS3B01G131700.9 | Wheat | nucleus | 13.79 | 23.32 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | ncoils:Coil | InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR018501 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 | PFAM:PF15612 |
| PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | SMART:SM00389 | SMART:SM00571 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS1B01G424100 | EnsemblPlants:TraesCS1B01G424100.1 | InterPro:WHIM1_dom | InterPro:WHIM2_dom | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:647227882..647239604
Molecular Weight (calculated)
205497.0 Da
IEP (calculated)
5.333
GRAVY (calculated)
-0.767
Length
1863 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSSGDGGDD GPGAAPGSPA PASSSAPSAG AAGAAGPGGA SGSSGKPTAR RVMKTPYQLE VLEQTYTEDP YPNEAKRVEL SAKLGLTDRQ LQMWFCHRRL
0101: KDRRPPPAAK RRDEEVAVPV LAPPPVLPHP HAEPAYGEQL LLPCSSSRRG PGRSSAVPRI SAPEIDRRYY EAHPVMLPPQ APVQLTRAAH RAIETVQQLI
0201: GEPLREDGPV LGDHFDPLPP GAFGAPMPVV PEQRKQPYRS HETSVFSAHD PKPMKASAFL PSIDPSVSST VTGKRKYMSG NSSHLPSRAV HEYQFLPEHS
0301: SDIYERTSQS CFYDAPAEAS NSRISSLSTG SHLLHGAEKA SSYAFDGQVS GSSHLNQHGK PLISLSGSTD YEMASNIDVS PARIEGQFGI PQVAGLQNPL
0401: ASAEGVDYHD EDAYRLDRKR KHNEESKIAK EVDAEEKRIR KELEKQDVLK KKREEQMRKE VERYDRERKK EEERFMREKQ REEERLQKEQ WREQKRMEKF
0501: LVKQSLRAEK LKQKEELRKE KEAARQKAAN ERATARRIAR EYMELMEDER LELMELVSRS KGLPSMLSLD SDTLQQLDSF RGMLTQFPTE AVRLKVPFSI
0601: KPWTSSESNI GNLLMVWKFF FTFADVLELP SFTLDEFVQS LHDYDSRLLG ELHVAVLKSI IKDIEDVART SSVVSGVNQS SSANPGGGHP QIVEGAYAWG
0701: FNILTWQRHL TYLTWPEILS QFGLSAGFGP QLKKRTEDVY HDDNEGRNSA DVISTLRNGS AAVKSAALMK ERGYTNRRRS RHRLTPGTVK FAAFHVLSLE
0801: GDKGLSILEV AEKIQRSGLR DLTTSKTPEA SISAALSRDT KLFERTAPST YCVKTPYRKD PADSEAVFSA AREKIRVFQN ALSACEEVEK DVEDAERGDD
0901: DSECDEADDD PDGDEVNIEE KDVNASVRAK DAGLPIAAGD INDEVKSVVN PSMPSSPHSK SPSGLQRMVD KSTAVSTSSD PPIGASQDAE IDESNQGESW
1001: VQGLAEGDYC DLSVEERLNA LVALIGVATE GNSMRAILEE RLEAANALKK QMWAESQLDR RRSREEFAGR MQHDPCTDLK ADADQGNNVG ECTLTPVHNL
1101: IKENGGKASS VNNDLLVDQQ SQLIMVHEGN GVSRISNANP ESLSAQQYAS SEKTRSQLKS FIGHKAEQLY VYRSLPLGQD RRRNRYWQFS TSVSSNDPGS
1201: GRIFFESRDG YWRLIDSAEA FDALVASLDT RGIRESHLHS MLQSIESTFK DAIGRIKCAT IEHSAGRNLR NGSSEIISPN HSNEFGSPCS TLSGVVSDTG
1301: VAYSDSFKIE LGRNDLEKVA ISKRACMFLK WMWECNNHQS TCAMKYGKKR CSDLIHGCDY CYQIYLAEEM HCSSCHKTFK SIHSLSEHTS QCEEKRRTDP
1401: NWKIQLSDDS VPIRPRLLKL LLATVEASVP AEALQPFWTD GYRKSWAVKL FSTSSNEEIF QLLTVLEGAL KRDYLSSNFE TTAELLNSNT LDFAGRNSIA
1501: CSGSAAVLPW VPNTAAAVTL RLLDIDSSLS YTLDQKAGLN KEREAGDFIK GPSRYTAVKN KQEMGLVGAP GFDHHDGAQL TPSNGLRGRG RGGRGRGRGG
1601: RSLSRGGRVP RGVGSSPRIE FRDDNNVSYK ETADKQAGRG RGRGRGRGRG RGRGRGRGRG RGSISESGSG SVRGRGRGRG RGLRTVRPRQ PVELGARSIP
1701: KANLLGTFGM LSNAKAMIVH SPQSSGAEEW GLDRRAYAED DENNSVSQSD ESEGDEENDE PMNEDYDEQL PDYSRGNSGS SPLQMMDSES EDNDEYDEEG
1801: EEDGPDYDAE QPMDEDNDDA EMSEDDELGD DGDDDDGGGS QGGAGNADDD DDDGASYSSE YSE
0101: KDRRPPPAAK RRDEEVAVPV LAPPPVLPHP HAEPAYGEQL LLPCSSSRRG PGRSSAVPRI SAPEIDRRYY EAHPVMLPPQ APVQLTRAAH RAIETVQQLI
0201: GEPLREDGPV LGDHFDPLPP GAFGAPMPVV PEQRKQPYRS HETSVFSAHD PKPMKASAFL PSIDPSVSST VTGKRKYMSG NSSHLPSRAV HEYQFLPEHS
0301: SDIYERTSQS CFYDAPAEAS NSRISSLSTG SHLLHGAEKA SSYAFDGQVS GSSHLNQHGK PLISLSGSTD YEMASNIDVS PARIEGQFGI PQVAGLQNPL
0401: ASAEGVDYHD EDAYRLDRKR KHNEESKIAK EVDAEEKRIR KELEKQDVLK KKREEQMRKE VERYDRERKK EEERFMREKQ REEERLQKEQ WREQKRMEKF
0501: LVKQSLRAEK LKQKEELRKE KEAARQKAAN ERATARRIAR EYMELMEDER LELMELVSRS KGLPSMLSLD SDTLQQLDSF RGMLTQFPTE AVRLKVPFSI
0601: KPWTSSESNI GNLLMVWKFF FTFADVLELP SFTLDEFVQS LHDYDSRLLG ELHVAVLKSI IKDIEDVART SSVVSGVNQS SSANPGGGHP QIVEGAYAWG
0701: FNILTWQRHL TYLTWPEILS QFGLSAGFGP QLKKRTEDVY HDDNEGRNSA DVISTLRNGS AAVKSAALMK ERGYTNRRRS RHRLTPGTVK FAAFHVLSLE
0801: GDKGLSILEV AEKIQRSGLR DLTTSKTPEA SISAALSRDT KLFERTAPST YCVKTPYRKD PADSEAVFSA AREKIRVFQN ALSACEEVEK DVEDAERGDD
0901: DSECDEADDD PDGDEVNIEE KDVNASVRAK DAGLPIAAGD INDEVKSVVN PSMPSSPHSK SPSGLQRMVD KSTAVSTSSD PPIGASQDAE IDESNQGESW
1001: VQGLAEGDYC DLSVEERLNA LVALIGVATE GNSMRAILEE RLEAANALKK QMWAESQLDR RRSREEFAGR MQHDPCTDLK ADADQGNNVG ECTLTPVHNL
1101: IKENGGKASS VNNDLLVDQQ SQLIMVHEGN GVSRISNANP ESLSAQQYAS SEKTRSQLKS FIGHKAEQLY VYRSLPLGQD RRRNRYWQFS TSVSSNDPGS
1201: GRIFFESRDG YWRLIDSAEA FDALVASLDT RGIRESHLHS MLQSIESTFK DAIGRIKCAT IEHSAGRNLR NGSSEIISPN HSNEFGSPCS TLSGVVSDTG
1301: VAYSDSFKIE LGRNDLEKVA ISKRACMFLK WMWECNNHQS TCAMKYGKKR CSDLIHGCDY CYQIYLAEEM HCSSCHKTFK SIHSLSEHTS QCEEKRRTDP
1401: NWKIQLSDDS VPIRPRLLKL LLATVEASVP AEALQPFWTD GYRKSWAVKL FSTSSNEEIF QLLTVLEGAL KRDYLSSNFE TTAELLNSNT LDFAGRNSIA
1501: CSGSAAVLPW VPNTAAAVTL RLLDIDSSLS YTLDQKAGLN KEREAGDFIK GPSRYTAVKN KQEMGLVGAP GFDHHDGAQL TPSNGLRGRG RGGRGRGRGG
1601: RSLSRGGRVP RGVGSSPRIE FRDDNNVSYK ETADKQAGRG RGRGRGRGRG RGRGRGRGRG RGSISESGSG SVRGRGRGRG RGLRTVRPRQ PVELGARSIP
1701: KANLLGTFGM LSNAKAMIVH SPQSSGAEEW GLDRRAYAED DENNSVSQSD ESEGDEENDE PMNEDYDEQL PDYSRGNSGS SPLQMMDSES EDNDEYDEEG
1801: EEDGPDYDAE QPMDEDNDDA EMSEDDELGD DGDDDDGGGS QGGAGNADDD DDDGASYSSE YSE
0001: MEGGSEKTTP EGCGGESKSK RKMKTAAQLE VLENTYSAEP YPSEAIRADL SVKLNLSDRQ LQMWFCHRRL KERKSTTPSK RQRKELVTPT AMESWEPPVN
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
Arabidopsis Description
RLT2Homeobox-DDT domain protein RLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.