Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009562_P007 | Maize | nucleus, plastid | 74.51 | 72.72 |
| Os05t0562400-01 | Rice | nucleus | 54.75 | 71.8 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 66.38 | 65.66 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 66.59 | 65.49 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 66.16 | 65.27 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 66.1 | 65.14 |
| Zm00001d043915_P002 | Maize | nucleus | 43.89 | 63.26 |
| Zm00001d011560_P012 | Maize | nucleus | 59.83 | 58.89 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 51.75 | 53.47 |
| Zm00001d043914_P001 | Maize | nucleus | 16.21 | 52.75 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 54.69 | 52.49 |
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 19.32 | 49.58 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 39.36 | 47.31 |
| KRH21359 | Soybean | nucleus | 41.43 | 43.25 |
| CDY35748 | Canola | nucleus | 36.19 | 42.83 |
| Bra010869.1-P | Field mustard | nucleus | 36.52 | 42.61 |
| Solyc07g053610.2.1 | Tomato | nucleus | 41.43 | 42.59 |
| CDX90154 | Canola | nucleus | 36.52 | 42.53 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 52.07 | 42.51 |
| CDY22305 | Canola | nucleus | 37.94 | 42.4 |
| Bra033725.1-P | Field mustard | nucleus | 37.94 | 42.38 |
| AT5G44180.1 | Thale cress | nucleus | 38.86 | 42.03 |
| KRH55891 | Soybean | nucleus | 40.78 | 41.94 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 25.6 | 41.84 |
| CDX94760 | Canola | nucleus | 37.94 | 41.72 |
| KRH20389 | Soybean | nucleus | 40.88 | 41.7 |
| KRH50116 | Soybean | nucleus | 40.45 | 41.58 |
| Solyc02g077660.2.1 | Tomato | nucleus | 37.83 | 41.3 |
| CDY34099 | Canola | nucleus | 37.45 | 41.2 |
| Bra032908.1-P | Field mustard | nucleus | 37.34 | 41.16 |
| CDY65661 | Canola | nucleus | 37.55 | 41.15 |
| AT1G28420.1 | Thale cress | nucleus | 38.1 | 40.94 |
| Zm00001d025550_P001 | Maize | nucleus | 8.95 | 40.49 |
| Zm00001d034515_P002 | Maize | nucleus | 14.96 | 23.26 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:103630726 | MapMan:15.5.3.7 | UniProt:A0A1D6MCL1 | ProteinID:AQK88484.1 | ncoils:Coil |
| InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 |
| PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | SMART:SM00389 |
| SMART:SM00571 | SUPFAM:SSF46689 | UniParc:UPI000220883B | InterPro:WHIM1_dom | InterPro:WHIM2_dom | EnsemblPlantsGene:Zm00001d039002 |
| EnsemblPlants:Zm00001d039002_P019 | EnsemblPlants:Zm00001d039002_T019 | SEG:seg | : | : | : |
Description
Homeobox-transcription factor 3Putative homeodomain-like transcription factor superfamily protein
Coordinates
chr6:-:168610000..168621490
Molecular Weight (calculated)
204300.0 Da
IEP (calculated)
5.433
GRAVY (calculated)
-0.724
Length
1832 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESSDDGGSG PLLLAAGMGS PGHSLVPAAV GGASSAPGAS GSGGKPPVKR VMKTPYQLEV LERTYAEDSY PNETKRAELS VQLNLTDRQL QMWFCHRRLK
0101: DRKPLAKRQL RDDEVSAPVI APSPVLPPPS PPSEMIAGTV GTYREQLPPY SRRGPDRPSV PRLSVPEIGR RYYEPPQVML PHMAPVHLTQ AEHRVINSVE
0201: ALIGEPLRDD GPVLGIEFDP LPPGAFGTPI VPEPPRQPFR SYDTKMFFGH DSKPMKALAF LPATDPLLPN RGKQKSLVGS SHLGSQAVHE YQFLPEQPSD
0301: TYERASQSHF YNAPAEASNL RVAPLSTGSR FLHGLEQAPS YTFHSQSSGS SHSAHRGRSP IALALTDHEG ALSNINVSPT PIHGKFSIPQ VAGFESSLAS
0401: SERMGYHDDD TYRVDRKRKH NEEAKTVREV EAHEKRIRKE LEKQDLLNRK REEQMQRETE RLGRERRKEE ERLMRERQRE EEKFQREQRR AHKRMEKFMQ
0501: KQSIRAEKLR QKEELRREKE AAKQKAANER ATARRIARES MELMEDERLE LLELASRSKG LLSMVSLDSD TLQQLDSFRG MLGKFPPETV RLKVPFSIKP
0601: WADSEDIIGN LLMVWKFFVT FGDVLGLPSF TLDEFVQALH DYDSRLLGEL HIALLKSIIK DIEDVARTPS VALGVNQSSS ANPGGGHPQI VEGAYAWGIN
0701: ILNWQHHLNF LTWPEILRQF GLCAGFGPQL KKSNAEIVHH RDNNEVHNGV DVISILRNGS AAVKAAALMK ERGYTNRRSR HRLTPGTVKF AAFYVLSLEG
0801: SRGLTILEVA EKIQKSGLRD LTTSKTPEAS VSAALSRDTK LFERTAPSTY CVKTPYRKDP DDSEAVLSAA REKIRVFQNT LSECEEVEKD VDEAERDEDS
0901: ECDDATDDAD GDDVNIEGKD AKSPLVGAQY DTQITVVGDV KKESNSVMNI SVPPSIQIKS SASVPLHTLD SKASSSTDPQ VGDDDKDTEI DESNQGESWV
1001: QGLAEGDYCD LSVDERLNAF VALIGVATEG NSIRAILETL QERLEAASAL KKQMWAEAQL DKRRSRDDFT SKVQYDSCVG IKVDTDQKNN AAESTLVPVD
1101: NPIRNNNGNS SLTNNDLLVD KQNQLITGDV FQQWNGVSQE LSTNPESLSV QQYASSEKTR SQLKSFIGHK AEQLYVYRSL PLGQDRRRNR YWQFSASSSS
1201: YDPGSGRVFF ESRDGYWRVI DSSEAFEALV SSLDTRGIRE SHLHSMLQSI EPTFREAVER KKCVSLEHTT GWTDNGSNES PNCNNEFGSP CSTLSGVASD
1301: NLMAYSDTFK IEIGHNEAEK SSISKRASVF LKWMWRECYC HQSTYTMKYG KKRCPELIQS CDHCYQIYLA EEQHCSSCHK SFKPIHNFLE HLSQCEDNQR
1401: TNPSWKTQIV GLSVPVGLRL LRLLLATIEA SVPAEALLPF WTDLYRKSWG VKLYSASSAE EVLQMLSVLE SAIKRDYLSS NFETTTELLN SNTQDATQNS
1501: VGGSGSATIL PWVPDTTAAV ALRLLDLDTS ISYKLHSKLV SNKEQEAGDF MKLPLRYPSI NKNKQEIEQF IPIGFDQQDG TLLTNSNGRR GRGRGGRGGR
1601: GSRGGSRGGS SRGGGGRVPR GIGSSSRIQF RDDNSVPYGR APRKNVRGGR TRGRGRGRGL RTVRPRQPSE FSATSIPKLN LLGSFSMLSK ANHTGNMHSP
1701: ESLGAEEWVL ERREYVKDDD DNLVSRYDES EEENGEPMNE EYDEQISGYP RDNSEFSPIQ MMGDVSHDED AEGDEGEEDG EDYETEDPAG DEDDDVEMDW
1801: DDDIRDNDDG NGAANADEDE GGTSSYSSEY SE
0101: DRKPLAKRQL RDDEVSAPVI APSPVLPPPS PPSEMIAGTV GTYREQLPPY SRRGPDRPSV PRLSVPEIGR RYYEPPQVML PHMAPVHLTQ AEHRVINSVE
0201: ALIGEPLRDD GPVLGIEFDP LPPGAFGTPI VPEPPRQPFR SYDTKMFFGH DSKPMKALAF LPATDPLLPN RGKQKSLVGS SHLGSQAVHE YQFLPEQPSD
0301: TYERASQSHF YNAPAEASNL RVAPLSTGSR FLHGLEQAPS YTFHSQSSGS SHSAHRGRSP IALALTDHEG ALSNINVSPT PIHGKFSIPQ VAGFESSLAS
0401: SERMGYHDDD TYRVDRKRKH NEEAKTVREV EAHEKRIRKE LEKQDLLNRK REEQMQRETE RLGRERRKEE ERLMRERQRE EEKFQREQRR AHKRMEKFMQ
0501: KQSIRAEKLR QKEELRREKE AAKQKAANER ATARRIARES MELMEDERLE LLELASRSKG LLSMVSLDSD TLQQLDSFRG MLGKFPPETV RLKVPFSIKP
0601: WADSEDIIGN LLMVWKFFVT FGDVLGLPSF TLDEFVQALH DYDSRLLGEL HIALLKSIIK DIEDVARTPS VALGVNQSSS ANPGGGHPQI VEGAYAWGIN
0701: ILNWQHHLNF LTWPEILRQF GLCAGFGPQL KKSNAEIVHH RDNNEVHNGV DVISILRNGS AAVKAAALMK ERGYTNRRSR HRLTPGTVKF AAFYVLSLEG
0801: SRGLTILEVA EKIQKSGLRD LTTSKTPEAS VSAALSRDTK LFERTAPSTY CVKTPYRKDP DDSEAVLSAA REKIRVFQNT LSECEEVEKD VDEAERDEDS
0901: ECDDATDDAD GDDVNIEGKD AKSPLVGAQY DTQITVVGDV KKESNSVMNI SVPPSIQIKS SASVPLHTLD SKASSSTDPQ VGDDDKDTEI DESNQGESWV
1001: QGLAEGDYCD LSVDERLNAF VALIGVATEG NSIRAILETL QERLEAASAL KKQMWAEAQL DKRRSRDDFT SKVQYDSCVG IKVDTDQKNN AAESTLVPVD
1101: NPIRNNNGNS SLTNNDLLVD KQNQLITGDV FQQWNGVSQE LSTNPESLSV QQYASSEKTR SQLKSFIGHK AEQLYVYRSL PLGQDRRRNR YWQFSASSSS
1201: YDPGSGRVFF ESRDGYWRVI DSSEAFEALV SSLDTRGIRE SHLHSMLQSI EPTFREAVER KKCVSLEHTT GWTDNGSNES PNCNNEFGSP CSTLSGVASD
1301: NLMAYSDTFK IEIGHNEAEK SSISKRASVF LKWMWRECYC HQSTYTMKYG KKRCPELIQS CDHCYQIYLA EEQHCSSCHK SFKPIHNFLE HLSQCEDNQR
1401: TNPSWKTQIV GLSVPVGLRL LRLLLATIEA SVPAEALLPF WTDLYRKSWG VKLYSASSAE EVLQMLSVLE SAIKRDYLSS NFETTTELLN SNTQDATQNS
1501: VGGSGSATIL PWVPDTTAAV ALRLLDLDTS ISYKLHSKLV SNKEQEAGDF MKLPLRYPSI NKNKQEIEQF IPIGFDQQDG TLLTNSNGRR GRGRGGRGGR
1601: GSRGGSRGGS SRGGGGRVPR GIGSSSRIQF RDDNSVPYGR APRKNVRGGR TRGRGRGRGL RTVRPRQPSE FSATSIPKLN LLGSFSMLSK ANHTGNMHSP
1701: ESLGAEEWVL ERREYVKDDD DNLVSRYDES EEENGEPMNE EYDEQISGYP RDNSEFSPIQ MMGDVSHDED AEGDEGEEDG EDYETEDPAG DEDDDVEMDW
1801: DDDIRDNDDG NGAANADEDE GGTSSYSSEY SE
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.