Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90701 | Sorghum | nucleus | 85.4 | 87.71 |
| TraesCS3A01G112300.2 | Wheat | nucleus | 60.87 | 65.96 |
| TraesCS2A01G124800.1 | Wheat | nucleus | 60.78 | 65.69 |
| TraesCS2B01G147300.4 | Wheat | nucleus | 60.87 | 65.66 |
| TraesCS3B01G131700.9 | Wheat | nucleus | 61.12 | 65.34 |
| TraesCS3D01G114300.2 | Wheat | nucleus | 63.07 | 64.83 |
| TraesCS2D01G127700.1 | Wheat | vacuole | 60.78 | 64.5 |
| HORVU3Hr1G020400.11 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 39.13 | 61.63 |
| HORVU2Hr1G021950.4 | Barley | nucleus, plastid | 60.44 | 59.93 |
| GSMUA_Achr9P24830_001 | Banana | cytosol, nucleus, plasma membrane | 35.65 | 51.72 |
| PGSC0003DMT400002603 | Potato | cytosol | 32.68 | 44.82 |
| CDX89461 | Canola | cytosol, endoplasmic reticulum | 18.34 | 44.81 |
| VIT_07s0005g06050.t01 | Wine grape | extracellular | 10.02 | 44.53 |
| KRH41406 | Soybean | nucleus | 39.05 | 42.55 |
| VIT_19s0085g00350.t01 | Wine grape | nucleus | 42.61 | 42.36 |
| KRH60120 | Soybean | nucleus | 38.45 | 41.87 |
| AT4G12750.1 | Thale cress | nucleus | 38.62 | 40.73 |
| GSMUA_Achr6P22010_001 | Banana | nucleus | 35.31 | 40.15 |
| Solyc11g006200.1.1 | Tomato | nucleus | 36.76 | 40.09 |
| Bra014277.1-P | Field mustard | nucleus | 33.45 | 38.63 |
| CDY60841 | Canola | nucleus | 32.85 | 37.14 |
| CDY51255 | Canola | nucleus | 32.85 | 37.07 |
| Zm00001d043915_P002 | Maize | nucleus | 17.06 | 15.81 |
| Zm00001d025550_P001 | Maize | nucleus | 5.43 | 15.8 |
| Zm00001d011560_P012 | Maize | nucleus | 24.53 | 15.53 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 24.11 | 15.13 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 23.26 | 14.96 |
| Zm00001d043914_P001 | Maize | nucleus | 6.54 | 13.68 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:103644204 | MapMan:35.1 | UniProt:A0A1D6L888 | InterPro:DDT_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | ProteinID:ONM10459.1 |
| PFAM:PF00046 | PFAM:PF02791 | PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 |
| PANTHER:PTHR10390 | PANTHER:PTHR10390:SF44 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0008427AC1 | InterPro:WHIM1_dom |
| InterPro:WHIM2_dom | EnsemblPlantsGene:Zm00001d034515 | EnsemblPlants:Zm00001d034515_P002 | EnsemblPlants:Zm00001d034515_T002 | SEG:seg | : |
Description
Homeobox-transcription factor 65Homeobox-DDT domain protein RLT3
Coordinates
chr1:-:295313706..295336499
Molecular Weight (calculated)
132330.0 Da
IEP (calculated)
7.373
GRAVY (calculated)
-0.501
Length
1178 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRDQMVTNG FGAKRDNAGA KKSPQQIQRL EKFYSDVQYP KPEEMGEYAT CVGLTYSQVR IWFKERRRKE RRMEMGAIGS QMERQFSARS SGPRCSSSSS
0101: FCNQAPIYDI SRSESDTWGM STAGEESKIL SQVLFPKDYI LSKIFRKDGP PLGSEFDPLP QSAHGCIRDT TCHHSSENQR TVKKRKIIES TNQRSDVYEN
0201: TAPVRKHGIG KGLMTVWHAM YSHNVKCQSG RNFIDETGCL RSLRPFDDFD GLEDRDNGRK TQVKSHLFDK FGKYYIVTAE LAIHKSCMVP TYVQNQGMTR
0301: KKIVKRSKVL VNRKKVPCKR VTGPKVHPPM ACHLSVDESE SLELQTELVT LVDDEELELS ELQTGPNPLR CSAHLSSSGR HDCPLCKDLL AKFPPQSLKM
0401: KKLFSTKPWE SSPEMVKKLF QIIRYVYTHF GSIDVHPFIF DEFVQAFHDK DSSLLGEVHV GLLKLLLLKA EIGSDGVFVP RSSKDCRFLS FLNFVREQEF
0501: DANVWIRSLN ALTWVEILRQ VLVASGFGPK QHLLNQEFFN KEKNQMAKYG LRPRTLKGEL FALLSKAGSC GLKVSVLAKS SEIIDLNVSS PLELEQLISL
0601: ALSSDITLFE KIAPSAYRLR VDPQIKGEED SMSDSDDSGS VDEDEDASRS DDGSDGSQKL KFLENESRLA RRKEKNAHGS PNKCSEIDES YSGEKWLLAL
0701: MEGEYSDLSI DEKLDCLVAL IDVVSGAGSV PRLEEPQRVL HNVPRVHPPQ SGGKIKKSTK NLCQYSDESL NGSGSLDCCH QGQSGRRKNQ DYTTDPGRND
0801: LPIAAHGPQV VLLGSDRRYN SYWLFLGPCR EDDPGHRRVY FESSEDGHWE VIDSPQELLS LLSILDSRGT REAHLLTSME KRQACLFEAM KKHVEGGKAA
0901: RLPASSDSYC SQTSSGDGTS PKTSSVDGAS SVSDIENTSV PTSLKDSNLD SSSAVVIESG RGGDEKISMW ERLQAFDKWI WTSFYSILTA VKSGKKSFKE
1001: SLLRCGSCHD LYWRDEKHCR ICHSTFEVGF DLEEKYAVHV ATCREPELSH EVPNHKFLPS QLQALKAAIH AIEASMPEAA FTGSWMKSAH KLWVKRLRRT
1101: SSLPELLQVL VDFVGAMDVD WLYKSSSARL RTNLDDIIVD FQTMPQTTSA VALWVVQLDA LIAPYLDNAM ARQLVNAR
0101: FCNQAPIYDI SRSESDTWGM STAGEESKIL SQVLFPKDYI LSKIFRKDGP PLGSEFDPLP QSAHGCIRDT TCHHSSENQR TVKKRKIIES TNQRSDVYEN
0201: TAPVRKHGIG KGLMTVWHAM YSHNVKCQSG RNFIDETGCL RSLRPFDDFD GLEDRDNGRK TQVKSHLFDK FGKYYIVTAE LAIHKSCMVP TYVQNQGMTR
0301: KKIVKRSKVL VNRKKVPCKR VTGPKVHPPM ACHLSVDESE SLELQTELVT LVDDEELELS ELQTGPNPLR CSAHLSSSGR HDCPLCKDLL AKFPPQSLKM
0401: KKLFSTKPWE SSPEMVKKLF QIIRYVYTHF GSIDVHPFIF DEFVQAFHDK DSSLLGEVHV GLLKLLLLKA EIGSDGVFVP RSSKDCRFLS FLNFVREQEF
0501: DANVWIRSLN ALTWVEILRQ VLVASGFGPK QHLLNQEFFN KEKNQMAKYG LRPRTLKGEL FALLSKAGSC GLKVSVLAKS SEIIDLNVSS PLELEQLISL
0601: ALSSDITLFE KIAPSAYRLR VDPQIKGEED SMSDSDDSGS VDEDEDASRS DDGSDGSQKL KFLENESRLA RRKEKNAHGS PNKCSEIDES YSGEKWLLAL
0701: MEGEYSDLSI DEKLDCLVAL IDVVSGAGSV PRLEEPQRVL HNVPRVHPPQ SGGKIKKSTK NLCQYSDESL NGSGSLDCCH QGQSGRRKNQ DYTTDPGRND
0801: LPIAAHGPQV VLLGSDRRYN SYWLFLGPCR EDDPGHRRVY FESSEDGHWE VIDSPQELLS LLSILDSRGT REAHLLTSME KRQACLFEAM KKHVEGGKAA
0901: RLPASSDSYC SQTSSGDGTS PKTSSVDGAS SVSDIENTSV PTSLKDSNLD SSSAVVIESG RGGDEKISMW ERLQAFDKWI WTSFYSILTA VKSGKKSFKE
1001: SLLRCGSCHD LYWRDEKHCR ICHSTFEVGF DLEEKYAVHV ATCREPELSH EVPNHKFLPS QLQALKAAIH AIEASMPEAA FTGSWMKSAH KLWVKRLRRT
1101: SSLPELLQVL VDFVGAMDVD WLYKSSSARL RTNLDDIIVD FQTMPQTTSA VALWVVQLDA LIAPYLDNAM ARQLVNAR
0001: MKRKSPLQVQ ALEGFYLEQM YPTPKEMEDL GKSLGLTLKE VRGWFKRRRS RGKGVKSMAN DGLGAKNPQL YDRSLMRSST SSRCVGVAVE ERCIVGTRKA
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR
Arabidopsis Description
Homeodomain-like transcriptional regulator [Source:TAIR;Acc:AT4G12750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.