Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G124800.1 | Wheat | nucleus | 94.39 | 94.13 |
| TraesCS3D01G114300.2 | Wheat | nucleus | 93.28 | 88.48 |
| HORVU2Hr1G021950.4 | Barley | nucleus, plastid | 92.82 | 84.93 |
| EER90701 | Sorghum | nucleus | 66.61 | 63.12 |
| Zm00001d034515_P002 | Maize | nucleus | 65.96 | 60.87 |
| GSMUA_Achr9P24830_001 | Banana | cytosol, nucleus, plasma membrane | 40.29 | 53.94 |
| VIT_07s0005g06050.t01 | Wine grape | extracellular | 11.41 | 46.79 |
| CDX89461 | Canola | cytosol, endoplasmic reticulum | 20.24 | 45.64 |
| PGSC0003DMT400002603 | Potato | cytosol | 36.06 | 45.63 |
| VIT_19s0085g00350.t01 | Wine grape | nucleus | 44.8 | 41.1 |
| KRH41406 | Soybean | nucleus | 40.39 | 40.61 |
| KRH60120 | Soybean | nucleus | 40.29 | 40.48 |
| GSMUA_Achr6P22010_001 | Banana | nucleus | 38.18 | 40.06 |
| AT4G12750.1 | Thale cress | nucleus | 40.94 | 39.84 |
| Solyc11g006200.1.1 | Tomato | nucleus | 38.91 | 39.17 |
| Bra014277.1-P | Field mustard | nucleus | 35.88 | 38.24 |
| CDY60841 | Canola | nucleus | 35.23 | 36.76 |
| CDY51255 | Canola | nucleus | 35.14 | 36.59 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 24.1 | 14.13 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 23.55 | 13.77 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | PFAM:PF00046 |
| PFAM:PF02791 | PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR10390 |
| PANTHER:PTHR10390:SF44 | SMART:SM00389 | SMART:SM00571 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS3A01G112300 | EnsemblPlants:TraesCS3A01G112300.2 |
| InterPro:WHIM1_dom | InterPro:WHIM2_dom | TIGR:cd00086 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3A:+:79444971..79455353
Molecular Weight (calculated)
121791.0 Da
IEP (calculated)
7.709
GRAVY (calculated)
-0.524
Length
1087 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDL TEYAASVGLT YNQVRIWFKE RRRKERRHME AAEVHVETQA SARSNWPRCS SSRSSNSSQS
0101: PMQVADTTGH HSYQDQSVLK KRKIMSPTAQ RSTLPFENND PVRKHGKGKG LMTVWHAMYS QTAEIQDCSS FIDESGCLRS LRPFEDFGGK LAQKQTLPRK
0201: KVNKKSRPAP SKRKVTCGRV TDLKEHPLVE CHLSVDESES SELRTEHATL VDDEELELSE LQAGPNPLRC SAHISSTGRH GCPLCKDLLA RFPPTSVRMK
0301: QPFPTKPWES SPEMVKKLFQ VVRFVYTHFG SMDVHPFTFD EFAQAFHDKD SLLLGKVHVS LLKLLMLNTE RGSGSVFVPR SSKDSRFSSF LNFVREQEFD
0401: VNFWIKSLNS LTWVEILRQV LVASGFGSDH HMLNRNFFNK EKNQMVKYGL RPRTLKGELF ALLSKKGSGG LKVAELAKSP QIIGLNLSGA SEVEQLIFST
0501: LSSDITLFEK IAPSAYRLRV DPRIKGKEDS RSDTEDSGTV DDDGDASSSG DESDGPQESY PEHESRIIRW RQKNVHKNMN KCSEIDESYS GERWLLGLME
0601: GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQSVLSN IQRAQSHASG GKIKKCTRTI YQSSDEYLNR PGSSHSFDSS MQGQSGSLRS QDYIADSGAN
0701: ESPTGFAHQP QIVLLGSDRR YNNYWLFLGP CRADDPGHRR VYFESSEDGH WEVIDSPQDL LSLLSVLDIR GTREAHLLAS MKKRQSCLFE GMKKHLEDGC
0801: VVALTASSDS SRSGTSSGNR YSPKPSSGDG ASPLSDIDSA SVPTYLAGNL QNASSAIGIG VGRRSDEKML KWERLQALDK WIWTSFYSSL TAVKCGKRSF
0901: KESLVHCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAI HVATCREPED LYDVPNHKVL PSQLQALKAA IHAIEARMPT AAFTGLWMKS SHNLWVKRLR
1001: RTSSLPELLQ VLVDFVGAID EDWLYQRSSA VSFSSYVDDI TVYFQTMPQT TSAVALWVVK LDALIAPHLA QADSGRGLGK GSIQTRA
0101: PMQVADTTGH HSYQDQSVLK KRKIMSPTAQ RSTLPFENND PVRKHGKGKG LMTVWHAMYS QTAEIQDCSS FIDESGCLRS LRPFEDFGGK LAQKQTLPRK
0201: KVNKKSRPAP SKRKVTCGRV TDLKEHPLVE CHLSVDESES SELRTEHATL VDDEELELSE LQAGPNPLRC SAHISSTGRH GCPLCKDLLA RFPPTSVRMK
0301: QPFPTKPWES SPEMVKKLFQ VVRFVYTHFG SMDVHPFTFD EFAQAFHDKD SLLLGKVHVS LLKLLMLNTE RGSGSVFVPR SSKDSRFSSF LNFVREQEFD
0401: VNFWIKSLNS LTWVEILRQV LVASGFGSDH HMLNRNFFNK EKNQMVKYGL RPRTLKGELF ALLSKKGSGG LKVAELAKSP QIIGLNLSGA SEVEQLIFST
0501: LSSDITLFEK IAPSAYRLRV DPRIKGKEDS RSDTEDSGTV DDDGDASSSG DESDGPQESY PEHESRIIRW RQKNVHKNMN KCSEIDESYS GERWLLGLME
0601: GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQSVLSN IQRAQSHASG GKIKKCTRTI YQSSDEYLNR PGSSHSFDSS MQGQSGSLRS QDYIADSGAN
0701: ESPTGFAHQP QIVLLGSDRR YNNYWLFLGP CRADDPGHRR VYFESSEDGH WEVIDSPQDL LSLLSVLDIR GTREAHLLAS MKKRQSCLFE GMKKHLEDGC
0801: VVALTASSDS SRSGTSSGNR YSPKPSSGDG ASPLSDIDSA SVPTYLAGNL QNASSAIGIG VGRRSDEKML KWERLQALDK WIWTSFYSSL TAVKCGKRSF
0901: KESLVHCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAI HVATCREPED LYDVPNHKVL PSQLQALKAA IHAIEARMPT AAFTGLWMKS SHNLWVKRLR
1001: RTSSLPELLQ VLVDFVGAID EDWLYQRSSA VSFSSYVDDI TVYFQTMPQT TSAVALWVVK LDALIAPHLA QADSGRGLGK GSIQTRA
0001: MKRKSPLQVQ ALEGFYLEQM YPTPKEMEDL GKSLGLTLKE VRGWFKRRRS RGKGVKSMAN DGLGAKNPQL YDRSLMRSST SSRCVGVAVE ERCIVGTRKA
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR
0101: SCQNLLPSSH ILAKVFRKDG PSLGSEFDHL PSGARKASWL GTSSVGQQKQ KVARKRKISE LMDHTSQDCI QENATVMKHG IGKGLMTVWR VMNPNRRDVS
0201: PCVDLLDERA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ KRSTEKKRRS IHREAELNKD ETQREFKENC ELAADGEVFK ETCQTISTLV DDEELEMRER
0301: HERGNPLTCS CHHPSSGSHG CFLCKDLLPK FPPNSVQMRM PFGLHPWNSS PESVKKLFKV VHFLYTYSVT LDIGPFTLDE FTRAFHDKDS LLLGKIHLSL
0401: LKLLLLDVET ELERGSFSNL SISCKFLALL QSVESQILIL DMWRNSLNSL TWTELLRQIL VAAGYGSLKC AVQSEELSKE RKLMKKYGLR LGTLKGELFR
0501: MLNGQGNNGL KISELADAPE VAVLNLATVP EERENSICST LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDDSGSV DDESDDCSIS SGDEIEHVSE
0601: NPALRKVKCR KRRKHKSKMR EVCSEIDESH PGEPWLLGLM EGEYSDLSVE EKLDVFVALI DLLSSGSTIR MEDLPRAVAD CAPSIYSHGS GGKIKRSSSN
0701: QYSYPRGSWV HGGELYGIKA LSKSSDSHPV DSSSIVGAFA KLAGNRANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG HRCVFFESSE DGHWEVINNK
0801: EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLSRQV TQSETAHFTD IVREDSSSPV SDIDNNLCLN EIANDQFSSQ HAAIVFEIGS KREKSLLWSL
0901: IQEFDDWIWA NFNFNLNSVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL EERYAIHAAT CMRKEECDTF PDHKVLSSQL QSLKAAVYAI
1001: ESAMPEDALI GAWRKSAHRL WAKRLRRSSS VSEITQVIGD FVGAINEEWL WHCSDQGQTL MGEIINCFPS MPQTTSAIAL WLVKLDTLIA PYVEKAPPER
1101: DQPLCRTRNT SRRASKR
Arabidopsis Description
Homeodomain-like transcriptional regulator [Source:TAIR;Acc:AT4G12750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.