Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34099 | Canola | nucleus | 99.88 | 99.7 |
| Bra010869.1-P | Field mustard | nucleus | 77.56 | 82.1 |
| AT1G28420.1 | Thale cress | nucleus | 78.88 | 76.89 |
| KRH21359 | Soybean | nucleus | 47.77 | 45.24 |
| KRH50116 | Soybean | nucleus | 47.53 | 44.33 |
| KRH20389 | Soybean | nucleus | 47.47 | 43.93 |
| Solyc02g077660.2.1 | Tomato | nucleus | 43.08 | 42.67 |
| Zm00001d043915_P002 | Maize | nucleus | 31.65 | 41.38 |
| Os05t0562400-01 | Rice | nucleus | 34.78 | 41.37 |
| Bra033725.1-P | Field mustard | nucleus | 38.81 | 39.33 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 25.93 | 38.45 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 40.97 | 38.41 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 41.16 | 37.34 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 42.72 | 37.19 |
| KXG33081 | Sorghum | nucleus | 40.79 | 36.81 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 40.91 | 36.62 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 40.79 | 36.61 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 40.61 | 36.61 |
| KXG33083 | Sorghum | nucleus | 40.13 | 36.59 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 40.79 | 36.55 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 40.67 | 36.54 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 40.73 | 36.52 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 40.79 | 36.39 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 40.43 | 36.15 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 40.73 | 36.07 |
| Zm00001d011560_P012 | Maize | nucleus | 39.47 | 35.25 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 41.64 | 30.84 |
| Zm00001d043914_P001 | Maize | nucleus | 8.18 | 24.16 |
| OQU75646 | Sorghum | cytosol | 8.24 | 23.74 |
| Bra014277.1-P | Field mustard | nucleus | 14.2 | 23.14 |
| Bra034196.1-P | Field mustard | nucleus | 5.84 | 20.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | EnsemblPlantsGene:Bra032908 | EnsemblPlants:Bra032908.1 | EnsemblPlants:Bra032908.1-P | ncoils:Coil |
| InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | UniProt:M4EVS5 | PFAM:PF00046 | PFAM:PF02791 |
| PFAM:PF05066 | PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 |
| PANTHER:PTHR36968:SF6 | SMART:SM00389 | SMART:SM00571 | SUPFAM:SSF46689 | UniParc:UPI00025424A1 | InterPro:WHIM1_dom |
| InterPro:WHIM2_dom | SEG:seg | : | : | : | : |
Description
AT1G28420 (E=0.0) HB-1 | HB-1 (homeobox-1); transcription factor
Coordinates
chrA09:-:11905321..11912399
Molecular Weight (calculated)
186417.0 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.806
Length
1662 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESDGEENQM RSVADSNHKN KKMKKVVDAS NSKDSPSSKP KRQMKTPFQL QTLEQVYSEE TYPSEATRAE LSEKLDLSDR QLQMWFCHRR LKDKKDGQVK
0101: KTPKPAPVQP ASAVPALSLP AAELDSGSDS GSGSGSGCSP YSEPRREFAS GSSNSRAEYE TMGSAGYEQP PPRSSVMVRR AVACIEAQLG EPLRDDGPTL
0201: GMEFDPLPPG AFGTPIAMQT HQGHPYESKI YEPLDVRPRR SQAATSAFHE QQSLNDPSSF TPDMYGRYSE SHSRGVDYEI SRPRSSSFMQ GNGPLPKSYG
0301: NSSRNCSTSQ QDMPSPILPS ARGDSFLLER DSSGLRAEDP YLLSDGVRMS NDVHRKGKIN DGRLGRGSGQ KDLEKLELQR KRNEERMRKE MERYERERRK
0401: EEERLMRERI KEEERLQREQ RREMERREKF LQRENERAEK NKQKEEIRRE KEAIRRKIAV EKATARRIAK EAMDLIEDEQ LELMDLAASS KGLSSVIQLD
0501: HDTLQNLDLY RDSLSTFPPK ALQLKMPFTI SPWKDSKENV GNLLMVWRFL ISFSDVLDLW PFTLDEFIQA LHEYDSRLLG EIHITLLRSI IRDIEDVART
0601: PYSGIGNNQY TTANPEGGHP QIVEGAYAWG FDIRSWKKHL NPLTWPEILR QLGLSSGFGP RLKKSNSRVT HTGEKDEAKG CEDIISTLRS GSAAESAFAS
0701: MLEKGLLAPR KSRHRLTPGT VKFAAFHVLS LEGSKGLTVI ELADKIQKSG LRDLRTSKTP EASISVALTR DVKLFERIAP STYCVRAPYV KDPADGEAIL
0801: AEARKKIKAF ENGLAGPEDV NDLEKDEDFE CDIDEDPEVD DLATLPSASK SADLGDANGL SEKGGEIMFS DVKADVKSEV EKGVSSPPTS SMKSIVPQCH
0901: SEQRKDNAVV EDSKQGKSWV LGLTEGEYCH LSVEERLEAL VALVGIANEG NSIRASLEDR LEAANSLKKQ MWAEAQLDNS CMRDVLKFDI QNSTREINSF
1001: NRDPSQLVDE TKPPLEVVSN DVHKLSTERG SVNQEGNISQ ENFSSKRSRS QLKSYISHKA EEVYPYRSLP LGQDRRHNRY WHFAASASKS DPCSGLIFVE
1101: LHDSKWRLID SAEAFDTLVA SLDMRGVRES HLRIMLQKIE GAFKENASKN INLARNPSLK EDSVSPSSAI LGLSSDSMGA STSIRVELGR DDKEKENFLK
1201: RFHAFQRWMW TETYSSVPSC ARKDGKKRCE LLATCEVCIA SYLSEYTHCT SCHQRLDMAD GSERKIVDSG LTASPLPFGV RLLKALLVFL EASVPDEAFE
1301: SFWTEEKRKN WGLKLNASSS PEELSQVLTY LESAIKKESL SSNFLSAKEL LGAAGADDQE SMDVFPWIPK TVSAVALRLS DLDASIVYVK PEKPEPVPED
1401: ENEQISLFPG NSLLKGKGPK EQEDQDEVVP NSGKKSNKRR VIFGSGSNKK AKKKKVQGGN GRFVAGRSNV AASRNIMSVE LNHQVPGRGK RTVRKRPERN
1501: DEDNYRLVSR MADIVKPTSE EDEEEEEEQT FRGIDEDWAG ETPREMDEEW ASETPNRVMT PMQVDGESDD NSVGVQSEDD DDDEGQFVSY SQRNKWGFDW
1601: NSNPNEAMED VEEEVAGVEQ VQREYVAEMS ESSEDDDVPA ANNNAAANNY DRESEDYSSS DS
0101: KTPKPAPVQP ASAVPALSLP AAELDSGSDS GSGSGSGCSP YSEPRREFAS GSSNSRAEYE TMGSAGYEQP PPRSSVMVRR AVACIEAQLG EPLRDDGPTL
0201: GMEFDPLPPG AFGTPIAMQT HQGHPYESKI YEPLDVRPRR SQAATSAFHE QQSLNDPSSF TPDMYGRYSE SHSRGVDYEI SRPRSSSFMQ GNGPLPKSYG
0301: NSSRNCSTSQ QDMPSPILPS ARGDSFLLER DSSGLRAEDP YLLSDGVRMS NDVHRKGKIN DGRLGRGSGQ KDLEKLELQR KRNEERMRKE MERYERERRK
0401: EEERLMRERI KEEERLQREQ RREMERREKF LQRENERAEK NKQKEEIRRE KEAIRRKIAV EKATARRIAK EAMDLIEDEQ LELMDLAASS KGLSSVIQLD
0501: HDTLQNLDLY RDSLSTFPPK ALQLKMPFTI SPWKDSKENV GNLLMVWRFL ISFSDVLDLW PFTLDEFIQA LHEYDSRLLG EIHITLLRSI IRDIEDVART
0601: PYSGIGNNQY TTANPEGGHP QIVEGAYAWG FDIRSWKKHL NPLTWPEILR QLGLSSGFGP RLKKSNSRVT HTGEKDEAKG CEDIISTLRS GSAAESAFAS
0701: MLEKGLLAPR KSRHRLTPGT VKFAAFHVLS LEGSKGLTVI ELADKIQKSG LRDLRTSKTP EASISVALTR DVKLFERIAP STYCVRAPYV KDPADGEAIL
0801: AEARKKIKAF ENGLAGPEDV NDLEKDEDFE CDIDEDPEVD DLATLPSASK SADLGDANGL SEKGGEIMFS DVKADVKSEV EKGVSSPPTS SMKSIVPQCH
0901: SEQRKDNAVV EDSKQGKSWV LGLTEGEYCH LSVEERLEAL VALVGIANEG NSIRASLEDR LEAANSLKKQ MWAEAQLDNS CMRDVLKFDI QNSTREINSF
1001: NRDPSQLVDE TKPPLEVVSN DVHKLSTERG SVNQEGNISQ ENFSSKRSRS QLKSYISHKA EEVYPYRSLP LGQDRRHNRY WHFAASASKS DPCSGLIFVE
1101: LHDSKWRLID SAEAFDTLVA SLDMRGVRES HLRIMLQKIE GAFKENASKN INLARNPSLK EDSVSPSSAI LGLSSDSMGA STSIRVELGR DDKEKENFLK
1201: RFHAFQRWMW TETYSSVPSC ARKDGKKRCE LLATCEVCIA SYLSEYTHCT SCHQRLDMAD GSERKIVDSG LTASPLPFGV RLLKALLVFL EASVPDEAFE
1301: SFWTEEKRKN WGLKLNASSS PEELSQVLTY LESAIKKESL SSNFLSAKEL LGAAGADDQE SMDVFPWIPK TVSAVALRLS DLDASIVYVK PEKPEPVPED
1401: ENEQISLFPG NSLLKGKGPK EQEDQDEVVP NSGKKSNKRR VIFGSGSNKK AKKKKVQGGN GRFVAGRSNV AASRNIMSVE LNHQVPGRGK RTVRKRPERN
1501: DEDNYRLVSR MADIVKPTSE EDEEEEEEQT FRGIDEDWAG ETPREMDEEW ASETPNRVMT PMQVDGESDD NSVGVQSEDD DDDEGQFVSY SQRNKWGFDW
1601: NSNPNEAMED VEEEVAGVEQ VQREYVAEMS ESSEDDDVPA ANNNAAANNY DRESEDYSSS DS
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.