Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35748 | Canola | nucleus | 72.61 | 79.97 |
| Bra010869.1-P | Field mustard | nucleus | 73.37 | 79.68 |
| CDX90154 | Canola | nucleus | 73.37 | 79.53 |
| Bra032908.1-P | Field mustard | nucleus | 76.89 | 78.88 |
| CDY34099 | Canola | nucleus | 76.89 | 78.74 |
| CDY65661 | Canola | nucleus | 77.18 | 78.71 |
| KRH21359 | Soybean | nucleus | 46.74 | 45.41 |
| KRH20389 | Soybean | nucleus | 46.8 | 44.43 |
| KRH50116 | Soybean | nucleus | 46.39 | 44.39 |
| Zm00001d043915_P002 | Maize | nucleus | 32.02 | 42.96 |
| Os05t0562400-01 | Rice | nucleus | 34.66 | 42.3 |
| Solyc02g077660.2.1 | Tomato | nucleus | 41.58 | 42.25 |
| AT5G44180.1 | Thale cress | nucleus | 40.35 | 40.61 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 41.29 | 39.71 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 25.57 | 38.89 |
| KXG33083 | Sorghum | nucleus | 40.94 | 38.29 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 41.29 | 38.18 |
| KXG33081 | Sorghum | nucleus | 41.23 | 38.16 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 41.35 | 38.11 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 40.94 | 38.1 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 41.35 | 38.03 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 41.35 | 38.01 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 42.35 | 37.82 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 41.0 | 37.74 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 41.06 | 37.7 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 41.06 | 37.57 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 40.88 | 37.49 |
| Zm00001d011560_P012 | Maize | nucleus | 40.12 | 36.75 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 40.23 | 36.55 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 41.94 | 31.86 |
| Zm00001d043914_P001 | Maize | nucleus | 8.33 | 25.22 |
| OQU75646 | Sorghum | cytosol | 8.27 | 24.44 |
| AT4G12750.1 | Thale cress | nucleus | 15.48 | 23.63 |
| AT4G03250.1 | Thale cress | nucleus | 5.22 | 17.55 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | EntrezGene:839740 | ProteinID:AAF16763.1 | ProteinID:AEE30975.1 | ArrayExpress:AT1G28420 |
| EnsemblPlantsGene:AT1G28420 | RefSeq:AT1G28420 | TAIR:AT1G28420 | RefSeq:AT1G28420-TAIR-G | EnsemblPlants:AT1G28420.1 | TAIR:AT1G28420.1 |
| Unigene:At.27788 | ncoils:Coil | InterPro:DDT_dom | UniProt:F4HY56 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0045892 | GO:GO:0048510 | Symbol:HB-1 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | RefSeq:NP_174164.2 | PFAM:PF00046 | PFAM:PF02791 |
| PFAM:PF05066 | PFAM:PF15612 | PFAM:PF15613 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 |
| PANTHER:PTHR36968:SF6 | SMART:SM00389 | SMART:SM00571 | SUPFAM:SSF46689 | UniParc:UPI000173900C | InterPro:WHIM1_dom |
| InterPro:WHIM2_dom | SEG:seg | : | : | : | : |
Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
Coordinates
chr1:+:9979478..9987737
Molecular Weight (calculated)
192000.0 Da
IEP (calculated)
5.134
GRAVY (calculated)
-0.790
Length
1705 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.