Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034196.1-P | Field mustard | nucleus | 52.07 | 55.35 |
| CDY21949 | Canola | nucleus | 49.31 | 52.19 |
| CDY22114 | Canola | nucleus | 48.32 | 51.58 |
| KRH62715 | Soybean | nucleus | 25.84 | 48.7 |
| VIT_06s0009g03530.t01 | Wine grape | nucleus | 34.32 | 32.95 |
| KRH73554 | Soybean | nucleus | 33.73 | 32.51 |
| KRH14573 | Soybean | nucleus | 32.15 | 30.93 |
| KRH45931 | Soybean | nucleus | 32.35 | 30.6 |
| KRG99068 | Soybean | nucleus | 31.76 | 30.55 |
| PGSC0003DMT400080267 | Potato | nucleus | 29.39 | 29.16 |
| Solyc11g065110.1.1 | Tomato | nucleus | 29.59 | 29.01 |
| PGSC0003DMT400012008 | Potato | nucleus | 26.04 | 25.98 |
| Solyc12g099760.1.1 | Tomato | nucleus | 24.46 | 23.85 |
| Os01t0672201-00 | Rice | nucleus | 6.51 | 12.31 |
| Zm00001d025550_P001 | Maize | nucleus | 7.3 | 9.14 |
| AT4G12750.1 | Thale cress | nucleus | 13.61 | 6.18 |
| AT1G28420.1 | Thale cress | nucleus | 17.55 | 5.22 |
| AT5G44180.1 | Thale cress | nucleus | 16.37 | 4.9 |
| Os01t0672300-01 | Rice | nucleus | 1.97 | 2.39 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | EntrezGene:827999 | ProteinID:AEE82297.1 | ArrayExpress:AT4G03250 | EnsemblPlantsGene:AT4G03250 |
| RefSeq:AT4G03250 | TAIR:AT4G03250 | RefSeq:AT4G03250-TAIR-G | EnsemblPlants:AT4G03250.1 | TAIR:AT4G03250.1 | UniProt:F4JI72 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | RefSeq:NP_192234.2 | PFAM:PF00046 | PO:PO:0000293 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF489 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0001E92F02 | SEG:seg | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
Coordinates
chr4:+:1424902..1428062
Molecular Weight (calculated)
56826.8 Da
IEP (calculated)
8.970
GRAVY (calculated)
-1.128
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.