Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22305 | Canola | nucleus | 78.75 | 81.39 |
| Bra033725.1-P | Field mustard | nucleus | 78.69 | 81.28 |
| CDX94760 | Canola | nucleus | 79.63 | 80.97 |
| VIT_12s0028g03090.t01 | Wine grape | nucleus | 43.92 | 48.82 |
| Zm00001d043915_P002 | Maize | nucleus | 34.53 | 46.03 |
| Os05t0562400-01 | Rice | nucleus | 36.13 | 43.81 |
| Solyc07g053610.2.1 | Tomato | nucleus | 45.4 | 43.15 |
| KRH55891 | Soybean | nucleus | 45.34 | 43.12 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 43.39 | 41.46 |
| AT1G28420.1 | Thale cress | nucleus | 40.61 | 40.35 |
| KXG33081 | Sorghum | nucleus | 43.86 | 40.34 |
| KXG33083 | Sorghum | nucleus | 43.33 | 40.26 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 45.1 | 40.02 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 42.98 | 39.48 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 43.09 | 39.37 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 42.92 | 39.3 |
| Zm00001d011560_P012 | Maize | nucleus | 43.15 | 39.28 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 42.92 | 39.19 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 42.5 | 38.88 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 42.03 | 38.86 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 42.5 | 38.77 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 42.5 | 38.73 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 42.44 | 38.59 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 41.09 | 37.08 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 43.86 | 33.11 |
| Zm00001d043914_P001 | Maize | nucleus | 8.38 | 25.22 |
| OQU75646 | Sorghum | cytosol | 8.32 | 24.44 |
| AT4G12750.1 | Thale cress | nucleus | 14.82 | 22.47 |
| AT4G03250.1 | Thale cress | nucleus | 4.9 | 16.37 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | EntrezGene:834441 | ProteinID:AED95070.1 | ProteinID:ANM68709.1 | ArrayExpress:AT5G44180 |
| EnsemblPlantsGene:AT5G44180 | RefSeq:AT5G44180 | TAIR:AT5G44180 | RefSeq:AT5G44180-TAIR-G | EnsemblPlants:AT5G44180.1 | TAIR:AT5G44180.1 |
| EMBL:AY042893 | EMBL:AY072465 | Unigene:At.24988 | ProteinID:BAB10985.1 | ncoils:Coil | InterPro:DDT_dom |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0043565 | GO:GO:0045892 |
| InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR018501 | RefSeq:NP_001318738.1 |
| RefSeq:NP_199231.1 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 | PFAM:PF15612 | PFAM:PF15613 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | UniProt:Q9FFH1 | SMART:SM00389 | SMART:SM00571 |
| SUPFAM:SSF46689 | UniParc:UPI00000A2B7A | InterPro:WHIM1_dom | InterPro:WHIM2_dom | SEG:seg | : |
Description
RLT2Homeobox-DDT domain protein RLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH1]
Coordinates
chr5:+:17782428..17790234
Molecular Weight (calculated)
190397.0 Da
IEP (calculated)
5.126
GRAVY (calculated)
-0.694
Length
1694 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGGSEKTTP EGCGGESKSK RKMKTAAQLE VLENTYSAEP YPSEAIRADL SVKLNLSDRQ LQMWFCHRRL KERKSTTPSK RQRKELVTPT AMESWEPPVN
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP
0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV
0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE
0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK
0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV
0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF
0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA
0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE
0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD
1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG
1101: RIFVELQDGR WRLIDSEEAF DYLVKSLDVR GVRESHLHFM LLKIEASFKE ALRRNVAANP GVCSISSSLD SDTAEISTTF KIELGDSNAV ERCSVLQRFH
1201: SFEKWMWDNM LHPSALSAFK YGAKQSSPLF RICRICAELH FVGDICCPSC GQMHAGPDVG ELCFAEQVAQ LGDNLRRGDT GFILRSSILS PLRIRLLKVQ
1301: LALVEASLPP EGLEAFWTEN LRKSWGMKLL SSSSHEDLYQ VLTTLEAALK RDFLSSNFET TSELLGLQEG ALASDLTCGV NVLPWIPKTA GGVALRLFDF
1401: DSSIVYTPDQ NNDPLKDKES EDFVGLETNI LRNLHEKDVM ETPVQVAAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR ARGNGKKPAV SVKPPRGAAN
1501: SNGETMLRPR AQPRGGRKNG RRSGTKGRKR PTQGTLGICN EVGGGRRVKE VAVTAKTSLP DNDDDWIETP ELQDDDGEAS SSGRSFQYED YDDDDVMAPI
1601: DDFDGGGESS KLVGRGEFSL HSDDEYEEEE EEEEDMNMKM DVNVVDDEDE DYINEDSYGR KQHGISISND AATRKRFNKF EDPDLTSSSS SDFQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.