Factsheet for PGSC0003DMT400012008

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099760.1.1	Tomato	nucleus	62.2	60.77
KRH62715	Soybean	nucleus	25.39	47.96
PGSC0003DMT400080267	Potato	nucleus	42.72	42.47
VIT_06s0009g03530.t01	Wine grape	nucleus	30.12	28.98
CDY21949	Canola	nucleus	26.18	27.77
KRH14573	Soybean	nucleus	28.74	27.7
Bra034196.1-P	Field mustard	nucleus	25.98	27.67
CDY22114	Canola	nucleus	25.59	27.37
KRH73554	Soybean	nucleus	28.15	27.19
KRG99068	Soybean	nucleus	27.17	26.19
AT4G03250.1	Thale cress	nucleus	25.98	26.04
KRH45931	Soybean	nucleus	26.97	25.56
Os01t0672201-00	Rice	nucleus	6.3	11.94
Zm00001d025550_P001	Maize	nucleus	6.3	7.9
PGSC0003DMT400002603	Potato	cytosol	7.09	4.19
Os01t0672300-01	Rice	nucleus	1.38	1.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:M1A0J6	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400004714	PGSC:PGSC0003DMG400004714	EnsemblPlants:PGSC0003DMT400012008
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF489	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000294C9C3
SEG:seg	:	:	:	:	:

Description

Homeobox-leucine zipper family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004714]

Coordinates

chr12:-:60352978..60358326

Molecular Weight (calculated)

57528.8 Da

IEP (calculated)

8.254

GRAVY (calculated)

-1.054

Length

508 amino acids

Sequence
(BLAST)

001: MEDSREIHSE DDKGHVGKLK ARILKTPAQI EGLEKFYEEH KYPTESMKLE VAQSLGLTEK QVSGWFCHRR LKDKRLLSRE TNAKGRQDRS SGVIQDRGSG
101: FRQDSCGSTK QGDDKYFDHR EVESRRLTGP EVSAADVTRE VDTMYRAESN LMEDTPSGSS SSLRDARFSK NVESFDMATS KYLPGNEPTD LKYVKPRTGP
201: SGYLKVKAKV ENASITAVKR QLGSVYRQDG PLLGVVFDLL PRGAFESSVQ TPVDDPEYAG KPVPYLTPDF TKVDKQSNSC IRYGSISKTN SHGSDLDGAN
301: FKKSNKSGHP EYYINQKPGR NSSMHNGDRY YLERNSSIEM RKGSGREVAV DGRCNYKLMS KHDGAEIKTS PGSSGGFRSS YSAKVNREQV TPRFTSRNCV
401: SLEIAEEEDL ECKPSNFFQK GSKHHYCPER ELPSKVEKDY IHVDRPTVDE DYNEDYNEDR VKIPWENEMR AAKRARDDEA PNHQEDVRKA SVTRMPSQTN
501: HQIRFGHV

Best Arabidopsis Sequence Match ( AT4G03250.1 )
(BLAST)

001: MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS
101: GLRQDSCGST KQTDYWNPKP REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR SYGYNKPSGY LKVKGESENF
201: AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM
301: EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL
401: TKSSKLLPPS RSRSPESMDR GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS QINRSGVELP SSLSGDDETD
501: ESSSSMD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JI72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.