Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g00290.t01 | Wine grape | nucleus | 21.87 | 51.4 |
| KRH21359 | Soybean | nucleus | 48.63 | 46.5 |
| KRH50116 | Soybean | nucleus | 48.87 | 46.02 |
| KRH20389 | Soybean | nucleus | 48.45 | 45.27 |
| VIT_10s0003g00270.t01 | Wine grape | nucleus | 29.86 | 44.69 |
| CDY35748 | Canola | nucleus | 41.12 | 44.57 |
| Bra010869.1-P | Field mustard | nucleus | 41.3 | 44.14 |
| CDX90154 | Canola | nucleus | 41.12 | 43.87 |
| CDY34099 | Canola | nucleus | 42.79 | 43.12 |
| Bra032908.1-P | Field mustard | nucleus | 42.67 | 43.08 |
| CDY65661 | Canola | nucleus | 42.43 | 42.58 |
| Zm00001d043915_P002 | Maize | nucleus | 31.88 | 42.09 |
| AT1G28420.1 | Thale cress | nucleus | 42.25 | 41.58 |
| Os05t0562400-01 | Rice | nucleus | 34.21 | 41.09 |
| GSMUA_Achr9P06610_001 | Banana | nucleus | 43.33 | 41.0 |
| Solyc07g053610.2.1 | Tomato | nucleus | 42.97 | 40.46 |
| GSMUA_Achr8P27210_001 | Banana | nucleus | 43.62 | 38.34 |
| Zm00001d039002_P019 | Maize | nucleus, plastid | 41.3 | 37.83 |
| KXG33083 | Sorghum | nucleus | 41.06 | 37.79 |
| KXG33081 | Sorghum | nucleus | 41.12 | 37.46 |
| TraesCS1D01G403700.1 | Wheat | nucleus | 41.18 | 37.31 |
| TraesCS3A01G245700.2 | Wheat | nucleus | 41.06 | 37.16 |
| TraesCS3D01G245800.2 | Wheat | nucleus | 41.06 | 37.14 |
| TraesCS1A01G395600.1 | Wheat | nucleus | 41.12 | 37.12 |
| HORVU3Hr1G061660.1 | Barley | nucleus | 40.7 | 37.04 |
| HORVU1Hr1G087180.1 | Barley | nucleus | 40.88 | 36.94 |
| TraesCS1B01G424100.1 | Wheat | nucleus | 40.94 | 36.88 |
| TraesCS3B01G273900.1 | Wheat | nucleus | 40.64 | 36.86 |
| Zm00001d009562_P007 | Maize | nucleus, plastid | 40.94 | 36.6 |
| Zm00001d011560_P012 | Maize | nucleus | 40.35 | 36.38 |
| GSMUA_Achr6P26980_001 | Banana | nucleus | 43.44 | 32.49 |
| OQU75646 | Sorghum | cytosol | 8.4 | 24.44 |
| Zm00001d043914_P001 | Maize | nucleus | 8.05 | 23.98 |
| Solyc11g006200.1.1 | Tomato | nucleus | 15.14 | 23.52 |
| Solyc11g065110.1.1 | Tomato | nucleus | 5.72 | 18.57 |
| Solyc12g099760.1.1 | Tomato | nucleus | 4.65 | 15.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.7 | ncoils:Coil | InterPro:DDT_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | GO:GO:0048510 | InterPro:HB1/Asxl_HTH | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR018501 | UniProt:K4B8Z1 | PFAM:PF00046 | PFAM:PF02791 | PFAM:PF05066 |
| PFAM:PF15612 | PFAM:PF15613 | PFscan:PS50071 | PFscan:PS50827 | PANTHER:PTHR36968 | SMART:SM00389 |
| SMART:SM00571 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc02g077660.2 | EnsemblPlants:Solyc02g077660.2.1 | UniParc:UPI0002767D0F | InterPro:WHIM1_dom |
| InterPro:WHIM2_dom | SEG:seg | : | : | : | : |
Description
Homeobox-DDT domain protein RLT1 [Source:Projected from Arabidopsis thaliana (AT1G28420) UniProtKB/Swiss-Prot;Acc:F4HY56]
Coordinates
chr2:+:42546523..42559093
Molecular Weight (calculated)
188781.0 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.606
Length
1678 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGGSDGEGN RNLIQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG LTDRQLQMWF CHRRLKDKNT SGGTEKKPRT GGTGGKRNLP
0101: ESPREDLVVA EAASDRGSGS VSRSGSGSGS SRFDNGDDMP APSIRSYESP RRAMERRVIA CIEAQLGEPL RDDGPIIGVE FDELPPGAFG IPIDLEERTD
0201: HYRQSFDCKL YGQYDAKVNV GSALSLSPVL TNGHREPAEP KIVSDKYGQI AAPYPYDSSV DCPSKNMATM QRNGHFVREY GVEGQSIGMM SQQSRQRRFL
0301: SPSRDNEFVP GNEDMLQLDR KRKSEEFGMG REVQVNEKRM RKELEKQDLL RRKMEEQMKK DMEKQDRERK KEEQRLMREQ QRKEERFQRE EKREMERREK
0401: FLQRELVRVE RKKQKDELRK EKEAAKQKAA MEKAMARRIA KESMELIEDE RLELMDLAAS SKGLPSIASL NYDTLQNLES FRESLCEFPP KSVQLKKPFS
0501: VEPWIASDDN VGNLLMAWRF CLNFADILGL WPFTLDEFLQ AFHDYDSRLL AEIQIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW
0601: GFDIRSWQRL LNPLTWSEVL RQFALSAGFG PPLKKKRERT CLNDSDETKG CEDIVSNLRS GSAALNAVAI MQEKGHMSQR KSRHRLTPGT VKFAAYHVLA
0701: LEGDKGLNVL DIAERIQKSG LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY ANGFLSGQNV EDEERDDDSE
0801: GEGDVAEGPE VDDLGTSYGA NKNNEQSSLL DTCLVNGKSK LSDEIGQQIG VDVVGIAVSN PSQGCSEIDE TKAGEPWVQG LAEGEYSDLC VEERLSALIA
0901: LIGIANEGNS IRAILEDRLD AANALKKQMW AESQLDKRRL KEETINKFND SSFNVVVEGS QSPLGYPNNK NHGTSPTTLV KDDSAGIVDN LQNHFESIPA
1001: EKSSAAQETF VGQFAVPSGN TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG SGRIFVESPH GCWKLIDTEE AFDCLLASLD
1101: TRGVRESHLH IMLQKIEGPF KGRARQNMSC GASSNPTSGV SADSPGSAIY GVSSDSWETS SSFKIELGRT EEEKKNALQR YQVFQIWMWK ECLSSSILCA
1201: MRYGKKRCLP LLGICGHCLD SYLSEEGICP SCNKMNCEVD MNGKFIEQAM DSMDNLKIDY NNLVVSNACP VRVRLMKAVL SFTEVCVPYE ALQSSWTEDC
1301: RKTWGLKLQN SSSPEDLLQI LTQLEGVINR DYLSADYETA QELMGLCALS RKTALESTYP EPVPQLPWIP QTTSAVALRL LELDSSISYD PQQKTEAELK
1401: NKVDCLPKPS LGYASLKDPQ KIEATVMDHG LMREENWDYL NNMPSSSRSR QVVRGRGGSR PRGKLQKGTT SKQPESGRTV VRPSETLTQV LIKQGETHGQ
1501: RHVRGRRTVR KRRIEQKIVE EAQPDYLGDR SSRLSLVVSP RKHVTEEFDM NMEGIEATND NSISMEAMRI RLFLPVMELK TTMTMKMMMT TTTLIDTEAM
1601: VKIWEDMLTW MTTQIEMGMS MRIKSRALQS LKIIVIEVAK IFVGLDNCNI ALMVDRQNTE VQCDAFVLLL RNFGILLR
0101: ESPREDLVVA EAASDRGSGS VSRSGSGSGS SRFDNGDDMP APSIRSYESP RRAMERRVIA CIEAQLGEPL RDDGPIIGVE FDELPPGAFG IPIDLEERTD
0201: HYRQSFDCKL YGQYDAKVNV GSALSLSPVL TNGHREPAEP KIVSDKYGQI AAPYPYDSSV DCPSKNMATM QRNGHFVREY GVEGQSIGMM SQQSRQRRFL
0301: SPSRDNEFVP GNEDMLQLDR KRKSEEFGMG REVQVNEKRM RKELEKQDLL RRKMEEQMKK DMEKQDRERK KEEQRLMREQ QRKEERFQRE EKREMERREK
0401: FLQRELVRVE RKKQKDELRK EKEAAKQKAA MEKAMARRIA KESMELIEDE RLELMDLAAS SKGLPSIASL NYDTLQNLES FRESLCEFPP KSVQLKKPFS
0501: VEPWIASDDN VGNLLMAWRF CLNFADILGL WPFTLDEFLQ AFHDYDSRLL AEIQIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW
0601: GFDIRSWQRL LNPLTWSEVL RQFALSAGFG PPLKKKRERT CLNDSDETKG CEDIVSNLRS GSAALNAVAI MQEKGHMSQR KSRHRLTPGT VKFAAYHVLA
0701: LEGDKGLNVL DIAERIQKSG LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY ANGFLSGQNV EDEERDDDSE
0801: GEGDVAEGPE VDDLGTSYGA NKNNEQSSLL DTCLVNGKSK LSDEIGQQIG VDVVGIAVSN PSQGCSEIDE TKAGEPWVQG LAEGEYSDLC VEERLSALIA
0901: LIGIANEGNS IRAILEDRLD AANALKKQMW AESQLDKRRL KEETINKFND SSFNVVVEGS QSPLGYPNNK NHGTSPTTLV KDDSAGIVDN LQNHFESIPA
1001: EKSSAAQETF VGQFAVPSGN TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG SGRIFVESPH GCWKLIDTEE AFDCLLASLD
1101: TRGVRESHLH IMLQKIEGPF KGRARQNMSC GASSNPTSGV SADSPGSAIY GVSSDSWETS SSFKIELGRT EEEKKNALQR YQVFQIWMWK ECLSSSILCA
1201: MRYGKKRCLP LLGICGHCLD SYLSEEGICP SCNKMNCEVD MNGKFIEQAM DSMDNLKIDY NNLVVSNACP VRVRLMKAVL SFTEVCVPYE ALQSSWTEDC
1301: RKTWGLKLQN SSSPEDLLQI LTQLEGVINR DYLSADYETA QELMGLCALS RKTALESTYP EPVPQLPWIP QTTSAVALRL LELDSSISYD PQQKTEAELK
1401: NKVDCLPKPS LGYASLKDPQ KIEATVMDHG LMREENWDYL NNMPSSSRSR QVVRGRGGSR PRGKLQKGTT SKQPESGRTV VRPSETLTQV LIKQGETHGQ
1501: RHVRGRRTVR KRRIEQKIVE EAQPDYLGDR SSRLSLVVSP RKHVTEEFDM NMEGIEATND NSISMEAMRI RLFLPVMELK TTMTMKMMMT TTTLIDTEAM
1601: VKIWEDMLTW MTTQIEMGMS MRIKSRALQS LKIIVIEVAK IFVGLDNCNI ALMVDRQNTE VQCDAFVLLL RNFGILLR
0001: MEMGSDGEDQ KIRSVVGDAN LNNKKKKIDN NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE EKYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
0101: NKPVKSSVAA VQSASVNELP AAAGSVPEQD SRSDSGSESG CSPYSNSRRN FASGSSSSRA ELDEYETMGK PSYESRLSTM VHRAIVCIEA QLGEPLRDDG
0201: PILGMEFDPL PPGAFGTPIA MQKHLLHPYE SDLYERHDPR PRRSHAAARS FHEQQSLDDP SSFTPNMYER YSENHARGMD YEVARSRISS FMHANGPVPR
0301: SYVTPGHASR NCSTSQQDMP SPIESAHHGD RFLLEKDSSV LGTEDPYLLP DGVRKSSDVH RKGKINDGRL GRGSETRENH GPKDLEKLEI QRKKNEERMR
0401: KEMERNERER RKEEERLMRE RIKEEERLQR EQRREVERRE KFLQRENERA EKKKQKDEIR REKDAIRRKL AIEKATARRI AKESMDLIED EQLELMELAA
0501: ISKGLPSVLQ LDHDTLQNLE VYRDSLSTFP PKSLQLKMPF AISPWKDSDE TVGNLLMVWR FLISFSDVLD LWPFTLDEFI QAFHDYDSRL LGEIHVTLLR
0601: SIIRDVEDVA RTPFSGIGNN QYTTANPEGG HPQIVEGAYA WGFDIRSWKK HLNPLTWPEI LRQLALSAGF GPKLKKKHSR LTNTGDKDEA KGCEDVISTI
0701: RNGTAAESAF ASMREKGLLA PRKSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELADKIQK SGLRDLTTSK TPEASISVAL TRDVKLFERI APSTYCVRAP
0801: YVKDPKDGEA ILADARKKIR AFENGFTGPE DVNDLERDED FEIDIDEDPE VDDLATLASA SKSAVLGEAN VLSGKGVDTM FCDVKADVKS ELEKEFSSPP
0901: PSTMKSIVPQ HSERHKNTVV GGVDAVIDES NQGQSWIQGL TEGDYCHLSV EERLNALVAL VGIANEGNSI RTGLEDRMEA ANALKKQMWA EAQLDNSCMR
1001: DVLKLDLQNL ASSKTESTIG LPIIQSSTRE RDSFDRDPSQ LLDETKPLED LSNDLHKSSA ERALINQDAN ISQENYASKR SRSQLKSYIG HKAEEVYPYR
1101: SLPLGQDRRH NRYWHFAVSV SKSDPCSRLL FVELHDGKWL LIDSEEAFDI LVASLDMRGI RESHLRIMLQ KIEGSFKENA CKDIKLARNP FLTEKSVVNH
1201: SPTDSVSPSS SAISGSNSDS METSTSIRVD LGRNDTENKN LSKRFHDFQR WMWTETYSSL PSCARKYGKK RSELLATCDA CVASYLSEYT FCSSCHQRLD
1301: VVDSSEILDS GLAVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK KWGFRLNTSS SPGELLQVLT SLESAIKKES LSSNFMSAKE LLGAANAEAD
1401: DQGSVDVLPW IPKTVSAVAL RLSELDASII YVKPEKPEVI PEDENEQISL FPRDSPFKGK GPREQEDQDE VAPNPGNRNK KRARVSLGSG SNRKVKRKKA
1501: QSGLNKFVVG RRNVAVNSNL MAVELNHQVP GKGKRTVRKR PERIDEDNSH LVNRMANIVR PKSEEVEEDE EEEEQTFRDI NEDWAAGETP REMEEDWANE
1601: TPNRMMTPMQ VDDESDNSVG VESEDEDGGG QFVDYSQRNK WGLDWNSNLN VAIEEDEEEE VVGVGRVEGE DDAEMSESSE DDDVPANNAA NNYDRESEGY
1701: SSSDS
Arabidopsis Description
RLT1Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.