Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26394 | Canola | cytosol | 80.0 | 73.6 |
| Bra001340.1-P | Field mustard | nucleus | 53.04 | 62.24 |
| Bra040062.1-P | Field mustard | nucleus | 40.0 | 25.99 |
| AT5G01570.1 | Thale cress | cytosol, nucleus, plastid | 24.35 | 13.21 |
Protein Annotations
Description
AT3G08880 (E=8e-013) | unknown protein
Coordinates
chrA10:-:12706038..12707277
Molecular Weight (calculated)
12928.9 Da
IEP (calculated)
4.189
GRAVY (calculated)
-0.730
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNKWQAEVS LAGNIGQVSL AGGIISDPIG DCEIAIEYAS HFSFNHSKAL HFACDEDFNQ IQESIKDCKK KLEACKKKTE EAYSDESAGD DDIERLQKEL
101: DEDMELESKI NDELR
101: DEDMELESKI NDELR
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Arabidopsis Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.