Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G08880.1 | Thale cress | nucleus | 51.89 | 54.73 |
| CDY15071 | Canola | nucleus | 16.98 | 34.29 |
| CDX73945 | Canola | nucleus | 15.57 | 33.67 |
| Bra001340.1-P | Field mustard | nucleus | 15.09 | 32.65 |
| CDY29558 | Canola | cytosol, plastid, vacuole | 13.21 | 32.18 |
| CDY13490 | Canola | cytosol | 15.57 | 31.43 |
| CDY00649 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 29.25 | 31.0 |
| CDY29557 | Canola | cytosol | 1.42 | 25.0 |
| Bra001962.1-P | Field mustard | cytosol | 13.21 | 24.35 |
| CDY26394 | Canola | cytosol | 10.85 | 18.4 |
Protein Annotations
| ArrayExpress:AT5G01570 | EnsemblPlants:AT5G01570.1 | EnsemblPlantsGene:AT5G01570 | EntrezGene:830357 | GO:GO:0008150 | ncoils:Coil |
| PANTHER:PTHR35730 | PO:PO:0000293 | ProteinID:AED90361.2 | RefSeq:AT5G01570 | RefSeq:AT5G01570-TAIR-G | RefSeq:NP_001318452.1 |
| SEG:seg | TAIR:AT5G01570 | TAIR:AT5G01570.1 | UniParc:UPI00084947EC | UniProt:F4K9F4 | MapMan:13.3.3.2.2.4 |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - /.../source: NCBI BLink). [Source:TAIR;Acc:AT5G01570]
Coordinates
chr5:+:221308..222798
Molecular Weight (calculated)
24766.3 Da
IEP (calculated)
4.357
GRAVY (calculated)
-0.691
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDQSRNFEM VISWGDELIH VLDDRKGFDV LVQTLEQLRA IPFSCDEDFK EIHESLQDLQ KKLDVCKEKT DEANSEIADE EEIERLQKEL DEELELECKL
101: KEELRFIADE LKDLNSQEAL FEEHRLAIKR NKRDQLRTET KLPMYASVTR VIPNIDDSLK TSGYMVGRDK RLMDKFEFDS NKSTSVYETC NERIGEEQIL
201: TVIGIANLGT VT
101: KEELRFIADE LKDLNSQEAL FEEHRLAIKR NKRDQLRTET KLPMYASVTR VIPNIDDSLK TSGYMVGRDK RLMDKFEFDS NKSTSVYETC NERIGEEQIL
201: TVIGIANLGT VT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.