Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73945 | Canola | nucleus | 39.5 | 80.61 |
| Bra001340.1-P | Field mustard | nucleus | 39.0 | 79.59 |
| CDY29557 | Canola | cytosol | 4.5 | 75.0 |
| CDY13490 | Canola | cytosol | 39.0 | 74.29 |
| CDY15071 | Canola | nucleus | 39.0 | 74.29 |
| CDY22172 | Canola | nucleus | 54.0 | 59.67 |
| CDY58656 | Canola | nucleus | 52.0 | 59.09 |
| CDY29558 | Canola | cytosol, plastid, vacuole | 20.5 | 47.13 |
| CDY26394 | Canola | cytosol | 27.0 | 43.2 |
| AT5G01570.1 | Thale cress | cytosol, nucleus, plastid | 31.0 | 29.25 |
Protein Annotations
| EnsemblPlants:CDY00649 | EnsemblPlantsGene:GSBRNA2T00110472001 | ncoils:Coil | PANTHER:PTHR35730 | ProteinID:CDY00649 | ProteinID:CDY00649.1 |
| SEG:seg | UniParc:UPI0004EEBC9E | MapMan:13.3.3.2.2.4 | : | : | : |
Description
BnaC03g36330D
Coordinates
chrLK031921:-:3809..5220
Molecular Weight (calculated)
23410.7 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.821
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGNRGEGEK KLLSFEPLLG RDWLFTFRNY DLINLLNSKN GFDVVSQSFD HSEALHFACD EDLNRIQESI KDCKKKLEAY KKKADEAYSD VSARDDEIER
101: LQRELDEDME LERKINAELV ADELKDLKAQ WASIDEKRQK KLSMYACVTK VIPEADVNDP FKISGYMVDR EKRVEKFQLE TNKMTAHESC NSMWSIINKQ
101: LQRELDEDME LERKINAELV ADELKDLKAQ WASIDEKRQK KLSMYACVTK VIPEADVNDP FKISGYMVDR EKRVEKFQLE TNKMTAHESC NSMWSIINKQ
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Arabidopsis Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.