Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58656 | Canola | nucleus | 92.82 | 95.45 |
| AT3G08880.1 | Thale cress | nucleus | 77.9 | 70.15 |
| CDY15071 | Canola | nucleus | 38.12 | 65.71 |
| CDY13490 | Canola | cytosol | 36.46 | 62.86 |
| CDX73945 | Canola | nucleus | 32.04 | 59.18 |
| CDY00649 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 59.67 | 54.0 |
| CDY29558 | Canola | cytosol, plastid, vacuole | 23.76 | 49.43 |
| CDY26394 | Canola | cytosol | 24.31 | 35.2 |
| CDY29557 | Canola | cytosol | 2.21 | 33.33 |
Protein Annotations
| EnsemblPlants:CDY22172 | EnsemblPlantsGene:GSBRNA2T00018577001 | PANTHER:PTHR35730 | ProteinID:CDY22172 | ProteinID:CDY22172.1 | SEG:seg |
| UniParc:UPI0004EED5B5 | UniProt:A0A078GAU8 | MapMan:13.3.3.2.2.4 | : | : | : |
Description
BnaC01g39290DBnaC01g39290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAU8]
Coordinates
chrLK032128:+:346916..348065
Molecular Weight (calculated)
20973.7 Da
IEP (calculated)
4.442
GRAVY (calculated)
-0.693
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLSESFDI EDLMSYGDDL ISLLNAKNGF EVVSQSFEDL KALRFVCDED FNQTQRSIQD CKKKLVACKK KTEEAYSDVS RGDDDVELVA EELKDLNAQW
101: TYVDEQRQSI KRKERDDLRA EKMLSMYASV TKVIPDVEDP SKISGYMVDR EKKVIEKFQF ETNKMTAYET CNSIWSIINK Q
101: TYVDEQRQSI KRKERDDLRA EKMLSMYASV TKVIPDVEDP SKISGYMVDR EKKVIEKFQF ETNKMTAYET CNSIWSIINK Q
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Arabidopsis Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.