Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29557 | Canola | cytosol | 11.43 | 100.0 |
| CDY15071 | Canola | nucleus | 92.38 | 92.38 |
| CDX73945 | Canola | nucleus | 73.33 | 78.57 |
| CDY26394 | Canola | cytosol | 61.9 | 52.0 |
| CDY00649 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 74.29 | 39.0 |
| CDY22172 | Canola | nucleus | 62.86 | 36.46 |
| CDY58656 | Canola | nucleus | 60.0 | 35.8 |
| AT5G01570.1 | Thale cress | cytosol, nucleus, plastid | 31.43 | 15.57 |
| CDY29558 | Canola | cytosol, plastid, vacuole | 3.81 | 4.6 |
Protein Annotations
| EnsemblPlants:CDY13490 | EnsemblPlantsGene:GSBRNA2T00077792001 | ncoils:Coil | PANTHER:PTHR35730 | ProteinID:CDY13490 | ProteinID:CDY13490.1 |
| SEG:seg | UniParc:UPI0004EE2A03 | UniProt:A0A078FGB2 | MapMan:13.3.3.2.2.4 | : | : |
Description
BnaA03g52080DBnaA03g52080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGB2]
Coordinates
chrLK032035:+:635694..636125
Molecular Weight (calculated)
12160.1 Da
IEP (calculated)
4.447
GRAVY (calculated)
-0.963
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MRESSDIKDL ISYRYDLINL LNSKNGLGVV SHSFNHSKAL HFACDEDFNQ IQESIKDCKK KLEACKKKTE EAYSDESAGD DDIERLQKEL DEDMELESKI
101: NDELR
101: NDELR
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Arabidopsis Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.