Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040062.1-P | Field mustard | nucleus | 97.73 | 97.18 |
| CDY22172 | Canola | nucleus | 95.45 | 92.82 |
| AT3G08880.1 | Thale cress | nucleus | 76.14 | 66.67 |
| CDY15071 | Canola | nucleus | 37.5 | 62.86 |
| CDY13490 | Canola | cytosol | 35.8 | 60.0 |
| CDX73945 | Canola | nucleus | 31.25 | 56.12 |
| CDY00649 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 59.09 | 52.0 |
| CDY29558 | Canola | cytosol, plastid, vacuole | 23.3 | 47.13 |
| CDY29557 | Canola | cytosol | 2.27 | 33.33 |
| CDY26394 | Canola | cytosol | 23.3 | 32.8 |
Protein Annotations
| EnsemblPlants:CDY58656 | EnsemblPlantsGene:GSBRNA2T00024986001 | ncoils:Coil | PANTHER:PTHR35730 | ProteinID:CDY58656 | ProteinID:CDY58656.1 |
| SEG:seg | UniParc:UPI0004EF1E52 | UniProt:A0A078J0I8 | MapMan:13.3.3.2.2.4 | : | : |
Description
BnaA01g32240DBnaA01g32240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0I8]
Coordinates
chrLK033686:+:44595..45701
Molecular Weight (calculated)
20305.0 Da
IEP (calculated)
4.433
GRAVY (calculated)
-0.653
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLSESFDI EDLMSYGDDL ISLLNAKNGF EVVSQSFEDL KALRFVCDED LNQTQRSIQD CKKKLVACKK KTEEASCGDD DVELAEELKD LNAQWMSVDE
101: QRQSVKRKER DDLRAEKMLS MYASVTKVIP EVEDPSKISG YMVDREKKVI EKFQFETNKM TVYETCNSIW SIINKQ
101: QRQSVKRKER DDLRAEKMLS MYASVTKVIP EVEDPSKISG YMVDREKKVI EKFQFETNKM TVYETCNSIW SIINKQ
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Arabidopsis Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.