Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040062.1-P | Field mustard | nucleus | 68.66 | 77.97 |
| CDY22172 | Canola | nucleus | 70.15 | 77.9 |
| CDY58656 | Canola | nucleus | 66.67 | 76.14 |
| AT5G01570.1 | Thale cress | cytosol, nucleus, plastid | 54.73 | 51.89 |
Protein Annotations
| MapMan:13.3.3.2.2.4 | EntrezGene:820036 | ProteinID:AAF07836.1 | ProteinID:AEE74690.1 | EMBL:AK175522 | EMBL:AK176735 |
| ArrayExpress:AT3G08880 | EnsemblPlantsGene:AT3G08880 | RefSeq:AT3G08880 | TAIR:AT3G08880 | RefSeq:AT3G08880-TAIR-G | EnsemblPlants:AT3G08880.1 |
| TAIR:AT3G08880.1 | EMBL:BT010497 | ncoils:Coil | GO:GO:0000775 | GO:GO:0000776 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009933 | GO:GO:0009987 |
| GO:GO:0051301 | GO:GO:0051781 | GO:GO:0051983 | RefSeq:NP_187500.2 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR35730 | UniProt:Q67XT3 | UniParc:UPI000042BAF8 | : | : | : |
Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
Coordinates
chr3:+:2702973..2704814
Molecular Weight (calculated)
23333.4 Da
IEP (calculated)
4.430
GRAVY (calculated)
-0.760
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.