Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73945 | Canola | nucleus | 98.98 | 98.98 |
| Bra001962.1-P | Field mustard | cytosol | 62.24 | 53.04 |
| CDY00649 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 79.59 | 39.0 |
| Bra040062.1-P | Field mustard | nucleus | 55.1 | 30.51 |
| AT5G01570.1 | Thale cress | cytosol, nucleus, plastid | 32.65 | 15.09 |
Protein Annotations
Description
AT3G08880 (E=2e-031) | unknown protein
Coordinates
chrA03:-:15918907..15919269
Molecular Weight (calculated)
11409.9 Da
IEP (calculated)
3.949
GRAVY (calculated)
-0.914
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MGESFDIQNL ISFGDDLISL LNSKNGFDVV SQSFDHSEAL HFACDEDFNQ IQESIKDCKK KTEEAYSDES ARDDEIERLQ RDLDEDMELE RKINDELR
001: MGNASENFDI EDLMSYGDDL INLLNVKNGF DIISQSSEQF KALNFACHED FNQIQGSIED CKTKLYACKK KTEEAYSDIA AEDEIERLQK ELDEEMEREF
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
101: KLKDELRLVA DELKDLNAQL SSIDEHKQST KRKVRDDLRA EKKLSMYASV TNVIPDIDDP SKISGYMVDR EKRLIEKFQF ETNKMTAYET CNSIWSIINK
201: Q
Arabidopsis Description
SPC24Kinetochore protein SPC24 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q67XT3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.