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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37520 Canola nucleus 99.56 94.59
Bra040518.1-P Field mustard nucleus 81.58 77.51
AT3G01460.1 Thale cress nucleus 80.06 74.91
VIT_13s0047g00420.t01 Wine grape cytosol 2.9 61.46
HORVU5Hr1G123360.1 Barley cytosol, nucleus 3.19 54.62
VIT_13s0101g00020.t01 Wine grape cytosol 2.85 47.54
KRH20317 Soybean nucleus 42.44 39.24
KRG93338 Soybean nucleus 41.9 39.22
VIT_14s0066g01450.t01 Wine grape nucleus 40.18 39.05
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 3.0 36.75
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 3.0 36.53
GSMUA_Achr3P12190_001 Banana nucleus 31.93 31.18
HORVU5Hr1G123350.3 Barley cytosol 13.36 30.67
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 24.56 30.58
Solyc05g005640.2.1 Tomato nucleus 29.08 29.57
EES04674 Sorghum nucleus 30.55 29.42
TraesCS6A01G169600.1 Wheat nucleus 29.81 29.02
TraesCS6D01G159400.1 Wheat nucleus 29.72 28.93
TraesCS6B01G197500.1 Wheat nucleus 29.62 28.88
HORVU6Hr1G034680.3 Barley nucleus 29.67 28.84
Zm00001d053697_P007 Maize nucleus 30.35 28.78
TraesCS4A01G325100.1 Wheat plastid 3.73 26.67
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 3.88 26.51
Os02t0192400-01 Rice nucleus 11.64 25.08
TraesCS5B01G570700.1 Wheat mitochondrion 3.59 24.33
TraesCS5D01G556100.1 Wheat nucleus 3.34 24.11
HORVU5Hr1G123390.2 Barley nucleus 17.34 22.97
Bra003689.1-P Field mustard nucleus 2.85 12.55
Bra015682.1-P Field mustard nucleus 2.6 10.71
Bra019757.1-P Field mustard cytosol 1.28 9.06
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.160.360Gene3D:3.30.40.10MapMan:35.1EnsemblPlantsGene:Bra039117EnsemblPlants:Bra039117.1
EnsemblPlants:Bra039117.1-PInterPro:Bromodomain-like_sfncoils:CoilInterPro:DNA-bd_dom_sfInterPro:FYrich_CInterPro:FYrich_N
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046872InterPro:IPR001739InterPro:IPR003888
InterPro:IPR003889InterPro:IPR013083InterPro:IPR019787InterPro:IPR036427UniProt:M4FDE6InterPro:Methyl_CpG_DNA-bd
PFAM:PF01429PFAM:PF05964PFAM:PF15612PFscan:PS50016PFscan:PS51542PFscan:PS51543
PANTHER:PTHR14140PANTHER:PTHR14140:SF29SMART:SM00249SUPFAM:SSF54171SUPFAM:SSF57903UniParc:UPI0002547773
InterPro:WHIM1_domInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
AT3G01460 (E=0.0) MBD9, ATMBD9 | MBD9; DNA binding / methyl-CpG binding
Coordinates
chrA05:+:23875208..23884015
Molecular Weight (calculated)
225606.0 Da
IEP (calculated)
5.192
GRAVY (calculated)
-0.459
Length
2036 amino acids
Sequence
(BLAST)
0001: MEPTDSSKHQ LGASTTAALD EDHHPSFLGI DLNEIPTGAG CTSVHHDDGD YEPVEVVRSI HDNPDPAPGA PADVPGPDRD AACGACGRPE SIELVAVCDA
0101: CERGFHLCCV NDGVEAAPSV DWMCRDCVTG GERSKLWPLG VKSKLILDMN ASPPSDAEGY GGEDTSDSRR HMLASTSCMD NSLEYSMTHS SSLNPGRGHA
0201: TLEASGMMSR NIKMTVDALD SRSLGFGFPL SLSNSSFPIR FPSVDPSELL LHNLRRFISE RHGVLEDGWH VEFKQPLNDY HLCAVYCAPN GNTFGSIQDV
0301: ACYLGLAVND NYSCMDAEIR NGSSLLQEKL HMSKRRKTSR WPNNGFPEQK GSSRNAQRRR FPFCGQTRTT FDVSPGTLFQ AGESLSSENN GCGCEEANKG
0401: LPMQFGDFFV LSLGRIDTRQ SYHNVNMIYP IGYKSCWHDK ITGSLFTSEV SDGSSGPVFK VTRSPCSKSF IPIGSLVLSC PKIDEMVEQN IGNRSNRRDS
0501: PQEHDEDTVE ILLSDLSPPL EDDILSCLRE KNLSKTLKCL RSEVGSSQVD FHKTSSYNQE SEVDIGDIVV EEDSLSVAWK KVSQKLVDAC SNVLKHKGTM
0601: SFRCKHVDRE TREINWDMIN EQDSVVLYLS RFFCSLAPRI AICGEKDNSK IATLVSALST WLDQSRFGLD ADFVQELIER MPGAESCSDY SFLKSRISSV
0701: TVAEGALVVE PKGGDNIKGE VFGEITRKAK RPKLNGGHGF RNPHPPPGRP MCLRLPPGRV GDFLQLSEVL WRFREILGLG ESFLPEKLEK ELVNPVLDGL
0801: LLDKSGKEAN RSEMNLSDKD CRVTEIFSVF DDSQPFSSEN TSASVLKETK VGDSRWPCLG ALLTRTHISV LQVLICELQS KVATFVDPNF DSGESRSRRG
0901: RKKDDSTLSD KRNKLHMLPV NELTWPELAR RYILSLLSMD GNHESAEIAA RESGKVFRCL QGDGGLLCGS LTGVAGMEAD SMLLAEASKK IFGSLTREND
1001: VIYVEDDDSD DLGATETNAC NGDIPEWALV LEPVRKLPTN VGTRIRKCVY EALERNPPEW AKKILEHSIS KEVYKGNASG PTKKAVLSLL ADVRGVDLVQ
1101: SSVKGTRKRT SIGVSDVIMK KCRAVLRDVA AADEDKVFCT LLGRKLLNSS DNDDDGLLGS PAMVSRSLDF RTIDLRLATG AYDGSTEAFL EDVLELWSCI
1201: RAMYADQPDC LELVETLSEK FKSLYEAERK GRKYQGELTR AYMEQTAHLA DVMKEKDYWE FSAEERIQLL KFLCDELLSS SLVHQHLEQC AEAIIEMQQK
1301: LRSLSSEWKN TKMRQEFLRA KLAKVEPSII KAMGEPQNSS SFADHNGDRV THDDDSSRAA FLNNNQGKAL LETDAQTGVS NVISCASNIS SPEKATSPGR
1401: HELPIEVTDN MSCEEEDTTE TLQTSVGRND ETQCLKPDAV ELQTANDASS VAFQELQACQ RDLNAASNEI ENVQQSIRSI EAQLLRQSIR REFLGSDASG
1501: RLYWGCSFPE EHPRILVDGC MSLQKPVQVD PTGSKVSSPF LRDIDHGRLM VSPWTCYETE AEISELVLWL HDDDLKERDL RESILCWKRL RFGNLHTEIK
1601: QAQNSSSPKL AGNLVTKAAM SMEKRYGPCI KLETETIKKR GKKTKVAELE KLCKCECLES ILPSMIHCLI CHKTFASDDE FEEHAENKCI PYSLATEEGR
1701: EIYDSSKAKE SLKSDHLSLK SNAGKEVTET SNVSELDSGL IRYHGEESIS PYHFEEICSK FVTKDSNRDL VKEIGLIGSN GIPTFLPVPS THFNDSVLIS
1801: ATSSKLDGGN SGGRVIFTGS EANGEDLNSE SSMCVDRFVT NDIRGPLNKP SGMDFGFSEQ KNEKTSGSRL KGCCVVPQAS LKRITGNALP VFRFLKTILL
1901: DMDVALPEEA LRPSKSHPDR RRAWRAFVKS AQSIFELVQA AIVVEDMIKT EYLKNEWWYW SSLSAAAQIS TLSALSVRLF SLDAAIMYDK SVTQSDPMDE
2001: TNPLPDQKSQ AVSDTQERSS RANRRSGKKR KEPEGS
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.