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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES04674 Sorghum nucleus 88.96 90.35
HORVU5Hr1G123360.1 Barley cytosol, nucleus 3.96 71.43
Os02t0192400-01 Rice nucleus 28.83 65.5
TraesCS6B01G197500.1 Wheat nucleus 60.27 61.97
TraesCS6A01G169600.1 Wheat nucleus 60.32 61.9
TraesCS6D01G159400.1 Wheat nucleus 60.27 61.88
HORVU6Hr1G034680.3 Barley nucleus 60.18 61.7
HORVU5Hr1G123350.3 Barley cytosol 23.1 55.92
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 42.11 55.29
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 4.15 53.61
TraesCS5D01G556100.1 Wheat nucleus 6.85 52.13
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 3.96 50.9
VIT_13s0047g00420.t01 Wine grape cytosol 2.19 48.96
HORVU5Hr1G123390.2 Barley nucleus 32.04 44.76
TraesCS4A01G325100.1 Wheat plastid 5.5 41.4
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 5.59 40.27
VIT_13s0101g00020.t01 Wine grape cytosol 2.24 39.34
TraesCS5B01G570700.1 Wheat mitochondrion 5.22 37.33
GSMUA_Achr3P12190_001 Banana nucleus 36.05 37.12
VIT_14s0066g01450.t01 Wine grape nucleus 33.07 33.89
VIT_01s0026g00150.t01 Wine grape nucleus 31.21 33.53
KRH20317 Soybean nucleus 32.84 32.02
KRG93338 Soybean nucleus 32.32 31.91
Bra040518.1-P Field mustard nucleus 31.25 31.31
CDY49055 Canola nucleus 31.16 31.31
CDY37520 Canola nucleus 31.21 31.26
AT3G01460.1 Thale cress nucleus 31.25 30.84
CDY28674 Canola nucleus 31.21 30.59
Bra039117.1-P Field mustard nucleus 28.78 30.35
Solyc05g005640.2.1 Tomato nucleus 28.09 30.12
Zm00001d035008_P001 Maize nucleus, plastid 3.96 15.32
Zm00001d049736_P001 Maize nucleus, plastid 3.68 14.16
Zm00001d011158_P001 Maize nucleus 5.54 10.06
Zm00001d042613_P001 Maize cytosol 0.84 9.89
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.40.10MapMan:35.1UniProt:A0A1D6QRM7ProteinID:AQK60149.1InterPro:Bromodomain
InterPro:Bromodomain-like_sfncoils:CoilInterPro:FYrich_CInterPro:FYrich_NGO:GO:0000003GO:GO:0003674
GO:GO:0003824GO:GO:0004402GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0006464GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009506GO:GO:0009628GO:GO:0009653
GO:GO:0009791GO:GO:0009987GO:GO:0010223GO:GO:0016043GO:GO:0016573GO:GO:0016740
GO:GO:0019538GO:GO:0042393GO:GO:0043966GO:GO:0043967GO:GO:0046872GO:GO:0048573
InterPro:IPR001487InterPro:IPR003888InterPro:IPR003889InterPro:IPR013083InterPro:IPR019787InterPro:IPR036427
PFAM:PF00628PFAM:PF15612ScanProsite:PS01359PFscan:PS50014PFscan:PS50016PFscan:PS51542
PFscan:PS51543PANTHER:PTHR14140PANTHER:PTHR14140:SF29SMART:SM00249SUPFAM:SSF47370SUPFAM:SSF57903
UniParc:UPI00084242DAInterPro:WHIM1_domInterPro:Zinc_finger_PHD-type_CSEnsemblPlantsGene:Zm00001d053697EnsemblPlants:Zm00001d053697_P007EnsemblPlants:Zm00001d053697_T007
InterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
PHD-transcription factor 39Methyl-CpG-binding domain-containing protein 9
Coordinates
chr4:-:239382347..239406115
Molecular Weight (calculated)
237939.0 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.460
Length
2147 amino acids
Sequence
(BLAST)
0001: MDRPPHLVID LNEAPPPPSS DTPPAQAPSP PQELAPPVQA PPPPPPPPPP PQFPPLLPPQ LPLGAPNQQV RLQQEALDVV LRVHRPLELR NTPFGPIGNV
0101: PAGLLPGLGL PLLPLQPPAP HPGEAGWGNP PAPCSSCGRQ EILGGTLVCD ACDRGFHPNC VRVWPPLFPP PPPPGPPGAR RPRAAANEDW ICPACERRGA
0201: RSTRWKLGAV ELDINAAPPE DPVTVIANDI RRQLLELFLI IIIIDYIDSI CLAIELLSLR GYESEQNITD GPQLTVANLP HFEGGHLQNT TLYDGMQFMP
0301: AFDLAQCFGM RQNFTSMDQD LIADGNVPQR SAHLRRRRDL PQTSTLPKVA VNHELGSAGT SMDPSFFNNT IKQSPSENRS SLKPPIFLME NSNHQPHHHT
0401: VALPVQYSDF FITSLGEIDN RTSYHNSYQI WPVGFTSYWH DRVTGSLFEC EVHDGGNFGP LFKMRRLPCS AFQLPDASTT VCLNVVRNAD TIETKEGSDL
0501: IEDTANDAND NISMLLSDFS ETNQDFLSCL GNDLEGKESL GCSNVETKDM TVPDVLSDPG SFSWAPTNDA NMYDKIGDFS YEGTSPSSVW RMISCAMMEA
0601: CEKMYKEHGH LVLFCTHSSE KSPFDYESGP QRTDGPFNLL AKFCSSNGPK VPQFIEKEND VQSTCALLKE WLYPDRIGFD LEFVQEFVES LPKSGACSHY
0701: QFLCNRTGIN SSLTIASGTL VAVNKNSPMH ARHGSVVSGP QDHAQPSSSS IRELPPGNPI SRKLAPELAG DVFQILEFLG RFAEIIGLKE LPSIEQVEDE
0801: LIDPWPMHPN KNDIHNYMDH NPPMNSPANV SSSYSNGESG ITSIEEMVYV SIPVETSSAR EAAQNKLAAQ TLGRCSGLVL PEIHIALLKV LFTELVSRVA
0901: IFVDPSIDLK ESKSRRGRKR DTDTLTRELK IDMLTANNLT WPELARRYIL AVSSMSGCMD LSDISSREGV KLFRCLQGDG GILCGALPGV VGMEKDASLL
1001: AEAETLICNS SANEGNTVFM MDYKDTDIVD SPEEPASDTT LPDWVKSLEP VRKLPTNVGT RIRKCVYEAL ERKPPEWARK ILEHSISKEV YKGNASGPTK
1101: KAVLSVLTEA CRTKVPQNTE KPRKERNIIS ISEAVLKKCR IALRRAISSD ESKQFANLLG TTLTNSNENE DEGILGFPGM VSRPLDFRTI DIRLAKGAYR
1201: GSWEAFLDDV QEVICNLQTA FADRPEVLIM VVALSESFES LYKTEVQDLV EKFDRYLSNE NDSSEIHQEL QDALTAANNK LPKAPWEDGV CKVCGIDRDD
1301: ESVLLCDNCD SEYHTYCLNP PLARIPLGNW YCPSCTAQTH VAVQEQKKCL GEEAHVFIEK LNKLAVAMDE KEYWELTVAE RIYLLKFLCD ELHNTALIRE
1401: HLDQCSDKSN DLQQKLRHLN YELKELRYRV EIKNPYATQS RWMKNDQVSN SSGLVENQQR AMPTASEHLE EAEQVNVGVN LNNPAEGVPA ALLDVGKPCS
1501: TDNGISSTSV IEGNKSLGLS EQPSKIITDQ TDRDSIAEGS NSCEKSLVGK SGTCDPNVGE THAATVINAP NGDLPDENAM TLSQDNIETS TSKLVDHDAD
1601: MNESNNLLER ISQLHGSIST VESQLSMASL RGECLGRDSV GRLYWVTGRP CKRPRLVADG SMMIPKDRDI SMVTSHSQST FDRGWNSASL VIYESDEEMK
1701: CLVDWLRDID PREKDLKDSI LHWQKSIYRQ ASFPITDPPV SKFSKSEPLM ELPNTNAFIV LEQKYGLQTD QDTSELSKRR GTKSRSGSEE RVYRCDCLEP
1801: IWPSRHHCLN CHETYLTLME YEGHNGGKCT SSNDCPNESK EIDEPKLKGS KSDIKEKDPV VHNCSVEPSN SGKLESCPYD FEEICRKFTT NDSIKETVKE
1901: IGLLGSNGIP SCVPSPAYFL DPPVLLNESK RNDDKPNDWT SSLQECQAVS AKMSGQEGSQ VGQDFSGNAG DEELPKSKKP VRDSTSAKEA PSTDISTRLL
2001: TVNGGLVPES SLMPVIGRNF HILKQLKINL LDIEAALPEE AFRASKSQQI RRRSWRAFVK DAELISYVVL AINFLQSMIK AEFLKKDWWY WSSFTAAIKT
2101: TTVSSLALRI YTLDDCIMYT KDPAPNLQPA DNARSGNKGK RKKDIDS
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.