Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G01460.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT3G01460.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT3G01460.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G530300.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 6.67 | 65.27 |
| TraesCS6A01G169600.1 | Wheat | nucleus | 77.0 | 60.18 |
| VIT_13s0047g00420.t01 | Wine grape | cytosol | 3.24 | 55.21 |
| TraesCS4A01G325100.1 | Wheat | plastid | 8.13 | 46.67 |
| Os02t0192400-01 | Rice | nucleus | 26.85 | 46.45 |
| VIT_13s0101g00020.t01 | Wine grape | cytosol | 3.36 | 45.08 |
| EES04674 | Sorghum | nucleus | 55.78 | 43.14 |
| Zm00001d053697_P007 | Maize | nucleus | 55.29 | 42.11 |
| GSMUA_Achr3P12190_001 | Banana | nucleus | 37.92 | 29.74 |
| VIT_01s0026g00150.t01 | Wine grape | nucleus | 35.11 | 28.73 |
| VIT_14s0066g01450.t01 | Wine grape | nucleus | 35.72 | 27.88 |
| KRG93338 | Soybean | nucleus | 36.57 | 27.49 |
| KRH20317 | Soybean | nucleus | 36.76 | 27.29 |
| Solyc05g005640.2.1 | Tomato | nucleus | 32.05 | 26.17 |
| Bra040518.1-P | Field mustard | nucleus | 33.95 | 25.9 |
| CDY49055 | Canola | nucleus | 33.64 | 25.74 |
| CDY37520 | Canola | nucleus | 33.58 | 25.62 |
| CDY28674 | Canola | nucleus | 33.95 | 25.34 |
| AT3G01460.1 | Thale cress | nucleus | 33.7 | 25.32 |
| Bra039117.1-P | Field mustard | nucleus | 30.58 | 24.56 |
| TraesCS7A01G324700.2 | Wheat | nucleus, plastid | 5.44 | 15.75 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:FYrich_C | InterPro:FYrich_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR003888 | InterPro:IPR003889 | InterPro:IPR013083 | InterPro:IPR019787 |
| PFAM:PF00628 | PFAM:PF15612 | PFAM:PF15613 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51542 |
| PFscan:PS51543 | PANTHER:PTHR14140 | PANTHER:PTHR14140:SF29 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS4A01G324900 |
| EnsemblPlants:TraesCS4A01G324900.1 | InterPro:WHIM1_dom | InterPro:WHIM2_dom | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | TIGR:cd15519 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:+:612372451..612392100
Molecular Weight (calculated)
183459.0 Da
IEP (calculated)
6.301
GRAVY (calculated)
-0.409
Length
1635 amino acids
Sequence
(BLAST)
(BLAST)
0001: MISIYFSYSI KARNYYKSFL YIIYTHICDA CERGFHQTCV QVVWRPPVAV NEGWMCPECA IGAVNAQDIT RQLCQLPLFA PLSWLLFATS LSLHLMSRML
0101: MNGELCEVCI QPPSVYSVLD DMVCHLCRSL YGFKQAPCAW CEHFFKTSLG EIDKQASYHN CHQIWPVGFT SYWHDRVTGS LFECEVCECD GRSSAPLFKV
0201: RRLPCSVFPL PEASTILFQN GARKAAETKE SSSFIGYTAN DMDDDIYMMV DTPSETKQDF LSIFTSDMED QRTSLCCNDV QSSNMMSQIL PSNSENVPPG
0301: KEASINDQIG EFTFKGTSPS SVWGMISSAM VEACEKNGSG CQNFDGPYAP LTRFCSSNGP SIPRVTEKKN DVKSTYTLLK NWLYHDRIGL DLEFVQEIVE
0401: SLPRSRSCIN YQFLCNRTEF HSSVTVASGL LLSVHKDGQS NGDTPYGRHG AVTGLHDDAQ PSGSSIRKLP PGRPISHKLQ PESAADVFQI WEFLGRFAEI
0501: IDLKEVPSYE QLEDELADPW PTCASQKETL SKGIQQCRDY SSPMNSPANA FISHSNSESG LSNNEEIVSV FIPVETSSMK EARLDKLAAQ ILGRCTGRVL
0601: PRVHLALIKV LFGEVLSKLS IDPKESKPRR GRKKDTESHV STKEFNFDML TANKLTWPEL ARRYMLAISS INGCMDVYDI SSREGMKLFR CLHGDGGILC
0701: GAVPGVAGME KDARLLLEAE NLICSSLSTE GNKVYMMDYK YSAEVPIADN RTFPDWAEAL EPVRKLPTNV GTRIRNYVYQ ALDRKSPEWA RKILEHSVSK
0801: EVYKANASGR TKKAVLSVLS EACSVTVPQK TENPRNERKT ISISEVILKK CRIALRRAIS SDQYKLLGNL LGSIIVNSNE YIYEDEGILG FSGMVPRPLD
0901: FRTIDIRLAM GAYCGSWETF FEDVQEVLDL VQKFDCFLSR ENTGSEIHEE LQDILTATAK LPKAPWEYGI CKVCGIDRDD HIVLLCDGCD DEYHTYCLNP
1001: PLTRIPRGDW FCPSCMLKLE RSHLDQGAHD LKRQREGAES HAFHGKPSCI SAQRKSHLDQ GVQDLKPQRK GPYHDMLIKL AAAVAEKEYW ELSTQERIDM
1101: LKFLCDEMLN TVLIREHIEK CPDKFNDLQK KFYALNFELK DLKDKEEMRN SYGEMDTLSD QISKVQESIG TVESELNMAS LRRDFLGKDS LGRLYWVLGR
1201: SGKRPLLVVD GSMLISKERD PPSTSDCKGW NSASVVIYES DEEIRSLVDW LREYDPREKE LKRCIQQWQW QRQRLLHHQL GNFVPSDPPV SSQGSSNSSE
1301: QQLMEVPSTK AAAILGKTCR CDCLEPIWPA QHHCTGCHET YFTSMEYEDR AGKCNGHVNK EKDSVHPSST SGSTKLMKSC PYDFEEICGK FATNNSNKEI
1401: VKDIGLIGSN GVPSFVPSRA AFIDPPAMPA QKLGPEGSNS AQNCPAASTS CDENVSKSKE PAPDTDTTSC EEAASSATDK PTTRLLAVNG GLVPESSLRP
1501: VTGRNSHILK QQKINLLDID AALPEEALTT SKSQQMRRRS WRAFVKHAES ISEMVLATSM LERVIKSEFL KNDWWYWSSF TVAMKTSTVS SLALRIYTLD
1601: NCIMYTKQTN TVPPADSTKV VNKGRKGKEP EPSAS
0101: MNGELCEVCI QPPSVYSVLD DMVCHLCRSL YGFKQAPCAW CEHFFKTSLG EIDKQASYHN CHQIWPVGFT SYWHDRVTGS LFECEVCECD GRSSAPLFKV
0201: RRLPCSVFPL PEASTILFQN GARKAAETKE SSSFIGYTAN DMDDDIYMMV DTPSETKQDF LSIFTSDMED QRTSLCCNDV QSSNMMSQIL PSNSENVPPG
0301: KEASINDQIG EFTFKGTSPS SVWGMISSAM VEACEKNGSG CQNFDGPYAP LTRFCSSNGP SIPRVTEKKN DVKSTYTLLK NWLYHDRIGL DLEFVQEIVE
0401: SLPRSRSCIN YQFLCNRTEF HSSVTVASGL LLSVHKDGQS NGDTPYGRHG AVTGLHDDAQ PSGSSIRKLP PGRPISHKLQ PESAADVFQI WEFLGRFAEI
0501: IDLKEVPSYE QLEDELADPW PTCASQKETL SKGIQQCRDY SSPMNSPANA FISHSNSESG LSNNEEIVSV FIPVETSSMK EARLDKLAAQ ILGRCTGRVL
0601: PRVHLALIKV LFGEVLSKLS IDPKESKPRR GRKKDTESHV STKEFNFDML TANKLTWPEL ARRYMLAISS INGCMDVYDI SSREGMKLFR CLHGDGGILC
0701: GAVPGVAGME KDARLLLEAE NLICSSLSTE GNKVYMMDYK YSAEVPIADN RTFPDWAEAL EPVRKLPTNV GTRIRNYVYQ ALDRKSPEWA RKILEHSVSK
0801: EVYKANASGR TKKAVLSVLS EACSVTVPQK TENPRNERKT ISISEVILKK CRIALRRAIS SDQYKLLGNL LGSIIVNSNE YIYEDEGILG FSGMVPRPLD
0901: FRTIDIRLAM GAYCGSWETF FEDVQEVLDL VQKFDCFLSR ENTGSEIHEE LQDILTATAK LPKAPWEYGI CKVCGIDRDD HIVLLCDGCD DEYHTYCLNP
1001: PLTRIPRGDW FCPSCMLKLE RSHLDQGAHD LKRQREGAES HAFHGKPSCI SAQRKSHLDQ GVQDLKPQRK GPYHDMLIKL AAAVAEKEYW ELSTQERIDM
1101: LKFLCDEMLN TVLIREHIEK CPDKFNDLQK KFYALNFELK DLKDKEEMRN SYGEMDTLSD QISKVQESIG TVESELNMAS LRRDFLGKDS LGRLYWVLGR
1201: SGKRPLLVVD GSMLISKERD PPSTSDCKGW NSASVVIYES DEEIRSLVDW LREYDPREKE LKRCIQQWQW QRQRLLHHQL GNFVPSDPPV SSQGSSNSSE
1301: QQLMEVPSTK AAAILGKTCR CDCLEPIWPA QHHCTGCHET YFTSMEYEDR AGKCNGHVNK EKDSVHPSST SGSTKLMKSC PYDFEEICGK FATNNSNKEI
1401: VKDIGLIGSN GVPSFVPSRA AFIDPPAMPA QKLGPEGSNS AQNCPAASTS CDENVSKSKE PAPDTDTTSC EEAASSATDK PTTRLLAVNG GLVPESSLRP
1501: VTGRNSHILK QQKINLLDID AALPEEALTT SKSQQMRRRS WRAFVKHAES ISEMVLATSM LERVIKSEFL KNDWWYWSSF TVAMKTSTVS SLALRIYTLD
1601: NCIMYTKQTN TVPPADSTKV VNKGRKGKEP EPSAS
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.