Factsheet for AT3G01460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040518.1-P	Field mustard	nucleus	81.16	82.41
CDY28674	Canola	nucleus	81.25	80.73
CDY49055	Canola	nucleus	79.18	80.63
CDY37520	Canola	nucleus	79.32	80.54
Bra039117.1-P	Field mustard	nucleus	74.91	80.06
VIT_13s0047g00420.t01	Wine grape	cytosol	2.67	60.42
HORVU5Hr1G123360.1	Barley	cytosol, nucleus	3.03	55.46
VIT_13s0101g00020.t01	Wine grape	cytosol	2.67	47.54
KRH20317	Soybean	nucleus	43.7	43.19
KRG93338	Soybean	nucleus	43.15	43.17
VIT_14s0066g01450.t01	Wine grape	nucleus	41.54	43.15
TraesCS3A01G530300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	2.85	37.13
TraesCS5D01G556000.1	Wheat	cytosol, extracellular, nucleus	2.8	36.75
HORVU5Hr1G123350.3	Barley	cytosol	14.66	35.96
GSMUA_Achr3P12190_001	Banana	nucleus	32.4	33.81
TraesCS4A01G324900.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	25.32	33.7
EES04674	Sorghum	nucleus	31.53	32.45
TraesCS6A01G169600.1	Wheat	nucleus	30.93	32.17
Solyc05g005640.2.1	Tomato	nucleus	29.6	32.17
TraesCS6D01G159400.1	Wheat	nucleus	30.79	32.04
TraesCS6B01G197500.1	Wheat	nucleus	30.7	31.99
HORVU6Hr1G034680.3	Barley	nucleus	30.74	31.95
Zm00001d053697_P007	Maize	nucleus	30.84	31.25
Os02t0192400-01	Rice	nucleus	13.28	30.58
TraesCS4A01G325100.1	Wheat	plastid	3.91	29.82
TraesCS5B01G537600.1	Wheat	mitochondrion, plastid	3.95	28.86
TraesCS5B01G570700.1	Wheat	mitochondrion	3.86	28.0
HORVU5Hr1G123390.2	Barley	nucleus	18.47	26.15
TraesCS5D01G556100.1	Wheat	nucleus	3.22	24.82
AT1G77250.1	Thale cress	nucleus	3.68	15.33

Protein Annotations

Gene3D:1.20.920.10	Gene3D:3.30.160.360	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:821132	UniProt:A0A178VJY9
ProteinID:AAF01531.1	ProteinID:AAF24616.1	ProteinID:AEE73669.1	ArrayExpress:AT3G01460	EnsemblPlantsGene:AT3G01460	RefSeq:AT3G01460
TAIR:AT3G01460	RefSeq:AT3G01460-TAIR-G	EnsemblPlants:AT3G01460.1	TAIR:AT3G01460.1	Unigene:At.41275	InterPro:Bromodomain-like_sf
ncoils:Coil	InterPro:DNA-bd_dom_sf	InterPro:FYrich_C	InterPro:FYrich_N	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005720
GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008327	GO:GO:0009058	GO:GO:0009506	GO:GO:0009628
GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010216	GO:GO:0010223	GO:GO:0016043
GO:GO:0016567	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	GO:GO:0040029	GO:GO:0042393
GO:GO:0043966	GO:GO:0043967	GO:GO:0046872	GO:GO:0048573	GO:GO:0061630	GO:GO:0090308
InterPro:IPR001739	InterPro:IPR003888	InterPro:IPR003889	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR036427
Symbol:MBD9	InterPro:Methyl_CpG_DNA-bd	RefSeq:NP_186795.1	ProteinID:OAP06084.1	PFAM:PF00628	PFAM:PF01429
PFAM:PF05964	PFAM:PF05965	PFAM:PF15612	PFAM:PF15613	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS50982	PFscan:PS51542	PFscan:PS51543	PANTHER:PTHR14140	PANTHER:PTHR14140:SF29
UniProt:Q9SGH2	SMART:SM00249	SUPFAM:SSF54171	SUPFAM:SSF57903	UniParc:UPI000009DF20	InterPro:WHIM1_dom
InterPro:WHIM2_dom	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]

Coordinates

chr3:+:173190..182454

Molecular Weight (calculated)

240444.0 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.477

Length

2176 amino acids

Sequence
(BLAST)

0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.