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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039117.1-P Field mustard nucleus 94.59 99.56
CDY49055 Canola nucleus 94.91 95.18
CDY28674 Canola nucleus 82.03 80.27
AT3G01460.1 Thale cress nucleus 80.54 79.32
VIT_13s0047g00420.t01 Wine grape cytosol 2.75 61.46
HORVU5Hr1G123360.1 Barley cytosol, nucleus 3.03 54.62
VIT_13s0101g00020.t01 Wine grape cytosol 2.71 47.54
VIT_14s0066g01450.t01 Wine grape nucleus 41.53 42.48
KRG93338 Soybean nucleus 43.02 42.39
KRH20317 Soybean nucleus 43.4 42.23
TraesCS5D01G556000.1 Wheat cytosol, extracellular, nucleus 2.85 36.75
TraesCS3A01G530300.1 Wheat cytosol, extracellular, mitochondrion, nucleus 2.85 36.53
HORVU5Hr1G123350.3 Barley cytosol 14.98 36.19
GSMUA_Achr3P12190_001 Banana nucleus 33.04 33.96
TraesCS4A01G324900.1 Wheat cytosol, mitochondrion, nucleus, vacuole 25.62 33.58
EES04674 Sorghum nucleus 31.54 31.98
Solyc05g005640.2.1 Tomato nucleus 29.77 31.87
TraesCS6A01G169600.1 Wheat nucleus 30.75 31.5
TraesCS6D01G159400.1 Wheat nucleus 30.7 31.47
TraesCS6B01G197500.1 Wheat nucleus 30.61 31.42
HORVU6Hr1G034680.3 Barley nucleus 30.61 31.33
Zm00001d053697_P007 Maize nucleus 31.26 31.21
Os02t0192400-01 Rice nucleus 13.67 31.01
TraesCS4A01G325100.1 Wheat plastid 3.78 28.42
TraesCS5B01G537600.1 Wheat mitochondrion, plastid 3.87 27.85
HORVU5Hr1G123390.2 Barley nucleus 18.76 26.15
TraesCS5B01G570700.1 Wheat mitochondrion 3.64 26.0
TraesCS5D01G556100.1 Wheat nucleus 3.13 23.76
CDX68064 Canola nucleus 3.59 16.67
CDX98073 Canola cytosol 2.1 15.68
CDX79193 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 3.55 15.26
CDX88353 Canola nucleus 3.22 14.32
CDX87531 Canola nucleus 3.27 14.14
Protein Annotations
Gene3D:1.20.920.10Gene3D:3.30.160.360Gene3D:3.30.40.10MapMan:35.1GO:A0A078HGU0UniProt:A0A078HGU0
InterPro:Bromodomain-like_sfEnsemblPlants:CDY37520ProteinID:CDY37520ProteinID:CDY37520.1ncoils:CoilInterPro:DNA-bd_dom_sf
InterPro:FYrich_CInterPro:FYrich_NGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00064138001InterPro:IPR001739InterPro:IPR003888InterPro:IPR003889InterPro:IPR013083InterPro:IPR019787
InterPro:IPR036427InterPro:Methyl_CpG_DNA-bdPFAM:PF00628PFAM:PF01429PFAM:PF05964PFAM:PF15612
ScanProsite:PS01359PFscan:PS50016PFscan:PS51542PFscan:PS51543PANTHER:PTHR14140PANTHER:PTHR14140:SF29
SMART:SM00249SUPFAM:SSF54171SUPFAM:SSF57903UniParc:UPI0004EDCD28InterPro:WHIM1_domInterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
BnaA05g33850DBnaA05g33850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGU0]
Coordinates
chrLK032402:-:118751..127978
Molecular Weight (calculated)
237678.0 Da
IEP (calculated)
5.190
GRAVY (calculated)
-0.440
Length
2143 amino acids
Sequence
(BLAST)
0001: MELTDSSKHP LGASTTAALD EDHHPSFLGI DLNEIPTGAG CTSVHHDDGD YEPVEVVRSI HDNPDPAPGA PADVPGPDRD AACGACGRPE SIELVAVCDA
0101: CERGFHLCCV NDGVEAAPSV DWMCRDCVTG GERSKLWPLG VKSKLILDMN ASPPSDAEGY GGEDTSDSRR HMLASSSCMD NSLEYSMTHS SSLNPGRGHA
0201: TLEASGMMSR NIKMTVDALD SRSLGFGFPL SLSNSSFPIR FPSVDPSELL LHNLRRFISE RHGVLEDGWH VEFKQPLNDY HLCAVYCAPN GNTFGSIQDV
0301: ACYLGLAVND NYSCMDAEIR NGSSLLQEKL HMSKRRKTSR WPNNGFPEQK GSSRNAQRRR FPFCGQTRTT FDVSPGTLFQ AGESLSSENN GCGCEEANKG
0401: LPMQFGDFFV LSLGRIDTRQ SYHNVNMIYP IGYKSCWHDK ITGSLFTSEV SDGSSGPVFK VTRSPCSKSF IPIGSLVLSC PKIDEMVEQN IGNRSNRRDS
0501: PQEHDEDTVE ILLSDLSPPL EDDILSCLRE KNLSKTLKCL RLEVGSSQVD FHKTSSYNQE SEVDIGDIVV EEDSLSLAWK KVSQKLVDAC SNVLKHKGTM
0601: SFRCKHVDRE TREINWDMIN EQDSVVLYLS RFFCSLAPRI AICGEKDNSK IATLVSALST WLDQSRFGLD ADFVQELIER MPGAESCSDY SFLKSRISSV
0701: TVAEGALVVE PKGGENIKGE VFGEITRKAK RPKLNGGHGF RNPHPPPGRP MCLRLPPGRV GDFLQLSEVL WRFREILGLG ESFLPEKLEK ELVNPVLDGL
0801: LLDKSGKEAN RSEMNLSDKD CRVTEIFSVF DDSQPFSSEN TSASVLKETK VGDSRWPCLG ALLTRTHISV LQVLICELQS KVATFVDPNF DSGESRSRRG
0901: RKKDDSTLSD KRNKLHMLPV NELTWPELAR RYILSLLSMD GNHESAEIAA RESGKVFRCL QGDGGLLCGS LTGVAGMEAD SMLLAEASKK IFGSLTREND
1001: VIYVEDDDSD DLGATETNAC NGDIPEWALV LEPVRKLPTN VGTRIRKCVY EALERNPPEW AKKILEHSIS KEVYKGNASG PTKKAVLSLL ADVRGGDLVQ
1101: SSVKGTRKRT SIGVSDVIMK KCRAVLRDVA AADEDKVFCT LLGRKLLNSS DNDDDGLLGS PAMVSRSLDF RTIDLRLATG AYDGSTEAFL EDVLELWSCI
1201: RAMYADQPDC LELVETLSEK FKSLYEAEVL PLVQKLMDYR KLECTTEMTK EIKDIVVSIS KLPKAPWDEG VCKICGVDKD DDSVLLCDTC DAGYHTYCLN
1301: PPLIRIPDGN WYCPSCVIAK RMAQDALESY KLVRQRKGRK YQGELTRAYM EQTAHLADVM KEKDYWEFSA EERIQLLKFL CDELLSSSLV HQHLEQCAEA
1401: IIEMQQKLRS LSSEWKNTKM RQEFLRAKLA KVEPSIIKAM GEPQNSSSFA DHNGDRVTHD DDSSRAAFLN NNQGKALLET DAQTGVSNVI SCASNISSPE
1501: KATSPGRHEL PIEVTDNMSC EEEDTTETLQ TSVGRNDETQ CLKPDAVELQ TANDASSVAF QELQACQRDL NAASNEIENV QQSIRSIEAQ LLRQSIRREF
1601: LGSDASGRLY WGCSFPEEHP RILVDGCMSL QKPVQVDPTG SKVSSPFLRD IDHGRLMVSP WTCYETEAEI SELVLWLHDD DLKERDLRES ILCWKRLRFG
1701: NLHTEIKQAQ NSSSPKLAGN LVTKAAMSME KRYGPCIKLE TETIKKRGKK TKVAELEKLC KCECLESILP PMIHCLICHK TFASDDEFEE HAENKCIPYS
1801: LATEEGREIY DSSKAKESLK SDHLSLKSNA GKEVAETSNV SELDSGLIRY HGEESISPYH FEEICSKFVT KDSNRDLVKE IGLIGSNGIP TFLPVPSTHF
1901: NDSVLISATS SKLDGGNSGG RVIFTGSEAN GEDLNSESSM CVDRFVTNDI RGPLNKPSGM DFGFSEQKNE KTSGSRLKGC CVVPQASLKR ITGNALPVFR
2001: FLKTILLDMD VALPEEALRP SKSHPDRRRA WRAFVKSAQS IFELVQAAIV VEDMIKTEYL KNEWWYWSSL SAAAQISTLS ALSVRLFSLD AAIMYDKSVT
2101: QSDPMDETNP LPDQKSQAVS DTQERSSRAN RRSGKKRKEP EGS
Best Arabidopsis Sequence Match ( AT3G01460.1 )
(BLAST)
0001: MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
0101: CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
0201: GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
0301: QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
0401: KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
0501: RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
0601: KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
0701: SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
0801: NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
0901: AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1001: LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1101: KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1201: GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1301: SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1401: ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1501: QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1601: LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1701: ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1801: PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1901: TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2001: KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2101: LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS QPVSDSQERS SRVRRSGKKR KEPEGS
Arabidopsis Description
MBD9MBD9 [Source:UniProtKB/TrEMBL;Acc:A0A178VJY9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.