CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98073	Canola	cytosol	49.8	86.41
CDX68064	Canola	nucleus	70.48	75.97
CDX87531	Canola	nucleus	56.43	56.77
CDX88353	Canola	nucleus	54.22	56.02
AT1G77250.1	Thale cress	nucleus	57.83	55.17
PGSC0003DMT400046398	Potato	nucleus	22.69	39.1
EES01867	Sorghum	nucleus	11.45	32.76
Zm00001d042613_P001	Maize	cytosol	11.24	30.77
Os01t0883400-00	Rice	extracellular	12.25	27.6
Solyc04g058190.2.1	Tomato	nucleus	32.13	26.53
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	20.28	25.77
GSMUA_Achr5P01220_001	Banana	nucleus	28.11	25.64
KRH53317	Soybean	nucleus	32.93	25.39
VIT_18s0001g01580.t01	Wine grape	nucleus	31.73	25.24
GSMUA_Achr11P...	Banana	nucleus	28.71	24.24
Zm00001d049736_P001	Maize	nucleus, plastid	25.9	23.12
Zm00001d035008_P001	Maize	nucleus, plastid	25.5	22.88
KXG24174	Sorghum	nucleus	24.3	21.96
Os08t0105000-01	Rice	nucleus	24.3	21.49
HORVU7Hr1G077650.5	Barley	nucleus, plastid	24.1	21.35
TraesCS7B01G225200.1	Wheat	nucleus, plastid	23.29	20.68
TraesCS7D01G321100.1	Wheat	nucleus, plastid	23.29	20.6
TraesCS7A01G324700.2	Wheat	nucleus, plastid	23.29	20.53
KRH18055	Soybean	nucleus	32.93	20.42
KRH16456	Soybean	nucleus	31.73	19.68
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	25.9	11.9
TraesCS3B01G231800.2	Wheat	nucleus	24.9	11.46
KXG32724	Sorghum	nucleus	25.7	10.67
Zm00001d011158_P001	Maize	nucleus	24.5	10.31
Os01t0547200-01	Rice	nucleus	7.23	4.05
CDY49055	Canola	nucleus	15.46	3.6
CDY37520	Canola	nucleus	15.26	3.55
CDY28674	Canola	nucleus	15.06	3.42
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.22	3.17

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CVI0	EnsemblPlants:CDX79193	ProteinID:CDX79193
ProteinID:CDX79193.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00131775001	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903
SignalP:SignalP-noTM	UniParc:UPI0004EE00D9	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaC06g21100D

Coordinates

chrLK031817:-:178760..181220

Molecular Weight (calculated)

54900.1 Da

IEP (calculated)

7.150

GRAVY (calculated)

-0.508

Length

498 amino acids

Sequence
(BLAST)

001: MQKISSLWYD HNVLFLLFVL TSNGGGTEKA NQANGFVKVD TVNSCGGGAM ASSANASSRG NKKLLVYKRR KLGRRSVSGT GSKCKQDERV SVDGVSHSGS
101: RESVASELDN QKFSTGTDLT GELPELPNPN KPTTDPKYET VTAGCQNVLS QVLASKEFAS LSKLLSEIKI EDLTCRTLID TRMQEGVYEV SPVLFSTDLQ
201: EDVGNDMAVL GNSLLELSKT FSTEQLKKFY TRESKPNPDE ENIRNVCVYD TCKLCGEKAA VTDCLACDHC EDMYHVSCAH PGGKGMSTCS WYCINCTVNG
301: IGSPHENCVV CERMKTDSRR VDKSTECKED SNESEENSSC NINHGGHKVE VKRDAELCRT CGTKVLENGR FITCDHPFCP HKYYHIRCLT AKLVKLHGAR
401: WYCSSCLCRN CLTDKDDDKI VMCDGCDDAY HIYCMKPPLA SVPDGEWFCK TCKAAIQKVG KVREAYEKKM GTLQKQNGNL KSNSGMDMLL NAADTLKG

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.