Factsheet for Os08t0105000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G225200.1	Wheat	nucleus, plastid	52.75	52.94
TraesCS7D01G321100.1	Wheat	nucleus, plastid	52.58	52.58
HORVU7Hr1G077650.5	Barley	nucleus, plastid	52.4	52.49
TraesCS7A01G324700.2	Wheat	nucleus, plastid	52.58	52.39
Zm00001d035008_P001	Maize	nucleus, plastid	42.98	43.6
Zm00001d049736_P001	Maize	nucleus, plastid	42.27	42.65
KXG24174	Sorghum	nucleus	41.74	42.65
GSMUA_Achr5P01220_001	Banana	nucleus	33.75	34.8
GSMUA_Achr11P...	Banana	nucleus	33.21	31.69
Os01t0883400-00	Rice	extracellular	11.72	29.86
PGSC0003DMT400046398	Potato	nucleus	14.92	29.07
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	19.72	28.32
CDX98073	Canola	cytosol	13.68	26.83
Bra019757.1-P	Field mustard	cytosol	13.68	26.83
CDX87531	Canola	nucleus	22.91	26.06
Bra015682.1-P	Field mustard	nucleus	22.91	26.06
Bra003689.1-P	Field mustard	nucleus	21.14	25.76
CDX68064	Canola	nucleus	21.14	25.76
CDX88353	Canola	nucleus	21.85	25.52
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.49	24.3
Solyc04g058190.2.1	Tomato	nucleus	25.58	23.88
AT1G77250.1	Thale cress	nucleus	21.67	23.37
KRH53317	Soybean	nucleus	25.4	22.14
VIT_18s0001g01580.t01	Wine grape	nucleus	24.51	22.04
KRH18055	Soybean	nucleus	25.04	17.56
KRH16456	Soybean	nucleus	24.51	17.19
Os02t0192400-01	Rice	nucleus	9.41	5.61
Os01t0547200-01	Rice	nucleus	6.75	4.27
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	4.44	3.05

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4344443	EMBL:AB517626	EMBL:AK102613
ProteinID:BAD08931.1	ProteinID:BAF22697.1	ProteinID:BAI77460.1	ProteinID:BAT03438.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0046872	GO:GO:0048586	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlantsGene:Os08g0105000
EnsemblPlants:Os08t0105000-01	PFAM:PF00628	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF123	UniProt:Q6ZJM9
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000023AC71	RefSeq:XP_015648278.1	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

EARLY HEADING DATE 3Homeodomain (PHD) transcriptional regulator, Flowering promoter (Os08t0105000-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0105000-02);Similar to PHD-finger family protein. (Os08t0105000-03)

Coordinates

chr8:-:272854..276978

Molecular Weight (calculated)

62204.7 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.527

Length

563 amino acids

Sequence
(BLAST)

001: MGSQNRPPPP RKRQPPPPED HLVTYKRRRS KETQPLPLMA NGANSKKDAK AQHWISWRDT LHGFLQSPAI SQGGGIQTCI RHALQHNPCL LTNGVVVHTE
101: FKGNPAHSQG EEAKVQHPNG AAGGKVVSAD AAIQDAAAAA SSEANKAMCN NALFDILVSQ KFALLCHLLL GTFHVNKPGD VIDLEKIDAK MRNGDYAHNP
201: ALFDDDIQQM WEKFEQVGQE MTGLASNLST ISRVSYQKQA SGFSEAEVAE HRIEEISLPG AVHVVTKEST TTVQLAPCDS SHSTIPKRTV PPGRDLCPCD
301: GCGTKVDVEE GLICDECDTM YHFACVKLLN PDIKQVPAIW HCSTCSFKKK ELAADTTNNV AHDCLHGGNC VLCDQLELVK TEEEDPKLPI KIELAEEREG
401: SSVSSMGEDN EPDLSTTALS NLCKHCGTCE DDDKRFMVCG HPYCVYKFYH IRCLKTSQLA IEQQKKLGCW YCPSCLCRGC FQDKDDDQIV MCDGCDEGYH
501: IYCMRPARNT IPKGKWYCTF CKIRRAAEGM HKYEDSVLKI HGNSKHACNV NQSKDSEGDG TEK

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.