CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035008_P001	Maize	nucleus, plastid	74.41	73.87
Zm00001d049736_P001	Maize	nucleus, plastid	70.78	69.89
TraesCS7B01G225200.1	Wheat	nucleus, plastid	44.28	43.49
HORVU7Hr1G077650.5	Barley	nucleus, plastid	43.92	43.06
TraesCS7A01G324700.2	Wheat	nucleus, plastid	44.1	43.01
TraesCS7D01G321100.1	Wheat	nucleus, plastid	43.92	42.98
Os08t0105000-01	Rice	nucleus	42.65	41.74
GSMUA_Achr5P01220_001	Banana	nucleus	31.58	31.87
GSMUA_Achr11P...	Banana	nucleus	33.58	31.36
EES01867	Sorghum	nucleus	9.62	30.46
PGSC0003DMT400046398	Potato	nucleus	15.24	29.07
CDX98073	Canola	cytosol	14.7	28.22
Bra019757.1-P	Field mustard	cytosol	14.7	28.22
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	19.6	27.55
CDX68064	Canola	nucleus	21.78	25.97
Bra003689.1-P	Field mustard	nucleus	21.78	25.97
CDX88353	Canola	nucleus	22.5	25.73
CDX87531	Canola	nucleus	22.87	25.45
Bra015682.1-P	Field mustard	nucleus	22.87	25.45
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.96	24.3
AT1G77250.1	Thale cress	nucleus	22.5	23.75
Solyc04g058190.2.1	Tomato	nucleus	25.05	22.89
KRH53317	Soybean	nucleus	24.32	20.74
VIT_18s0001g01580.t01	Wine grape	nucleus	22.87	20.13
KRH18055	Soybean	nucleus	23.59	16.19
KRH16456	Soybean	nucleus	23.23	15.94
KXG32724	Sorghum	nucleus	24.86	11.42
EES04674	Sorghum	nucleus	15.24	3.97
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	3.81	2.56

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6PER6	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0046872	GO:GO:0048586	InterPro:IPR013083
InterPro:IPR019787	EnsemblPlants:KXG24174	ProteinID:KXG24174	ProteinID:KXG24174.1	PFAM:PF00628	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF123	SMART:SM00249	EnsemblPlantsGene:SORBI_3007G004200	SUPFAM:SSF57903
UniParc:UPI0003C6E1E9	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:391364..395399

Molecular Weight (calculated)

60300.1 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.524

Length

551 amino acids

Sequence
(BLAST)

001: MASDGAARVR PPKLPVWEGL DPSNVLTYKR RRRGTGANAG HIAVTPSPDP VKNKMSAVVH AINSQQGGRQ MLDRHWRSWR DTLEGVLQST PGNQSAGGIQ
101: SCIRDALRYN GCHPKEHGNL ADGRGAGGED PVGAVHSEEN NAAFQLEDGT AASLEANKAV CHKALFDILI SEKFAMLCDL LAATFHVNTP DDVIGLQIID
201: AKMRNGDYAQ NPALLDHDIK KIWKKIEHVG QQMAGLASSL SLISQASHQK QASGVSEIDV AEHRIEETSL VGVAHKALRE LTPPCDSGHS TIPNGPDGIC
301: KDCGRKADSG GRIICDRCEA TYHVSCLKLA IDEEAPAKWY CPTCVGLDGP SKNDNNGRSH EGCDVCEWLV FEKPEEPAED VSQPELAVKT QESSVSSMDE
401: DSEPDLSTTA LANLCKHCGT CEDENKKFLV CGHPYCSYKF YHVLCMKESQ IASEKQKKQA CWYCPSCLCR CCFKNKDDEE IVLCDGCDDA YHIYCTVPPL
501: DSVPRGNWYC MSCNARRSAR GMQKYEESIL QKTSRVPDAK RPKVQAAAPE K

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.