Factsheet for Solyc04g058190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046398	Potato	nucleus	43.12	89.97
Bra019757.1-P	Field mustard	cytosol	18.57	39.02
CDX98073	Canola	cytosol	18.57	39.02
VIT_18s0001g01580.t01	Wine grape	nucleus	37.31	35.94
CDX87531	Canola	nucleus	27.36	33.33
Bra015682.1-P	Field mustard	nucleus	27.2	33.13
AT1G77250.1	Thale cress	nucleus	28.36	32.76
Bra003689.1-P	Field mustard	nucleus	25.04	32.68
CDX68064	Canola	nucleus	25.04	32.68
KRH53317	Soybean	nucleus	34.99	32.66
CDX88353	Canola	nucleus	25.87	32.37
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.53	32.13
EES01867	Sorghum	nucleus	8.79	30.46
GSMUA_Achr5P01220_001	Banana	nucleus	27.53	30.4
Zm00001d042613_P001	Maize	cytosol	8.62	28.57
GSMUA_Achr11P...	Banana	nucleus	27.53	28.14
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	18.08	27.81
Zm00001d035008_P001	Maize	nucleus, plastid	25.37	27.57
KRH16456	Soybean	nucleus	36.48	27.4
KRH18055	Soybean	nucleus	36.32	27.27
Zm00001d049736_P001	Maize	nucleus, plastid	25.21	27.24
Os01t0883400-00	Rice	extracellular	9.95	27.15
Os08t0105000-01	Rice	nucleus	23.88	25.58
HORVU7Hr1G077650.5	Barley	nucleus, plastid	23.38	25.09
KXG24174	Sorghum	nucleus	22.89	25.05
TraesCS7D01G321100.1	Wheat	nucleus, plastid	23.38	25.04
TraesCS7A01G324700.2	Wheat	nucleus, plastid	23.38	24.96
TraesCS7B01G225200.1	Wheat	nucleus, plastid	23.22	24.96
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	20.56	11.44
TraesCS3B01G231800.2	Wheat	nucleus	20.4	11.37
Zm00001d011158_P001	Maize	nucleus	20.23	10.31
KXG32724	Sorghum	nucleus	19.73	9.92
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.8	4.27
Solyc05g005640.2.1	Tomato	nucleus	14.1	4.25
Os01t0547200-01	Rice	nucleus	5.97	4.05

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787	UniProt:K4BT10	PFAM:PF00628
PFscan:PS50016	PFscan:PS50089	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903
EnsemblPlantsGene:Solyc04g058190.2	EnsemblPlants:Solyc04g058190.2.1	UniParc:UPI0002766227	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:55281405..55295906

Molecular Weight (calculated)

66178.1 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.476

Length

603 amino acids

Sequence
(BLAST)

001: MVGEDKGKSA GAIVPPGFLA ENGQTLKKLK CHLVEDKDGD MNLDGSSDVV CRTYKRRKRT KVVEDGFVVG HSAGQSTNKS MNGPVDTALN KSSCMQASVA
101: HMEPHGLLND SGDLLVRNWK GAALKQMFQS LESDGGLKGC IQEALASHSE ASCAVEAKES GKCCEDGNRG SLPSQPVSYG IQNGTKAVPG GSVDEPKSRT
201: VTEFCQHMFL DIVKSEKFAQ LCHVLFENFE GMKADKFFDI SRIHSRMKDG SYEGSSLLFH SDIQQMWTKL NEVGSEMISL SRSLSEISTG CFRAQVSGSV
301: HENTEDIKEE LVAKMEQAET NGVNKRCACQ CCGEKADSGD SLACDSCEEI YHLACVEPSG KEIPIRSWYC PECTAKGMDS PHDNCVVCER LTTSSSVIVE
401: NEVEDLTSED MVQELEDSTN GLVDGELKLC EGVEDSPFCN VCRTVVSNDN VRICGHSFCP HKFYHERCLT RKQLDASGSC WYCPSCLCRA CLNDCDDDKI
501: VLCDGCDHAY HIFCMQPPHT SIPVGKWFCK KCDVQIQRIR RARKAFESSE NEAKKRKEQC GELGVPKGKE KEALNESGGM EMLLDAAQTL NYQEDLAALG
601: SKD

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.