Factsheet for TraesCS7A01G324700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G321100.1	Wheat	nucleus, plastid	97.17	97.51
TraesCS7B01G225200.1	Wheat	nucleus, plastid	95.4	96.08
HORVU7Hr1G077650.5	Barley	nucleus, plastid	91.15	91.64
Os08t0105000-01	Rice	nucleus	52.39	52.58
Zm00001d049736_P001	Maize	nucleus, plastid	45.49	46.06
Zm00001d035008_P001	Maize	nucleus, plastid	44.96	45.77
KXG24174	Sorghum	nucleus	43.01	44.1
GSMUA_Achr5P01220_001	Banana	nucleus	36.11	37.36
GSMUA_Achr11P...	Banana	nucleus	35.22	33.73
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	21.42	30.87
PGSC0003DMT400046398	Potato	nucleus	14.16	27.68
CDX98073	Canola	cytosol	13.63	26.83
Bra019757.1-P	Field mustard	cytosol	13.63	26.83
Bra015682.1-P	Field mustard	nucleus	22.48	25.66
CDX88353	Canola	nucleus	21.77	25.52
CDX87531	Canola	nucleus	22.3	25.45
Bra003689.1-P	Field mustard	nucleus	20.0	24.46
CDX68064	Canola	nucleus	20.0	24.46
Solyc04g058190.2.1	Tomato	nucleus	24.96	23.38
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.53	23.29
AT1G77250.1	Thale cress	nucleus	21.42	23.18
VIT_18s0001g01580.t01	Wine grape	nucleus	24.42	22.04
KRH53317	Soybean	nucleus	23.36	20.43
KRH18055	Soybean	nucleus	23.36	16.44
KRH16456	Soybean	nucleus	23.19	16.31
TraesCS4A01G325100.1	Wheat	plastid	3.54	7.02
TraesCS3A01G530300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	1.95	6.59
TraesCS4A01G324900.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	15.75	5.44
TraesCS6A01G169600.1	Wheat	nucleus	15.93	4.3
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.66	3.9

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791
GO:GO:0048586	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFscan:PS50016	PANTHER:PTHR10615
PANTHER:PTHR10615:SF123	SMART:SM00249	SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS7A01G324700	EnsemblPlants:TraesCS7A01G324700.2	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:+:472189287..472192194

Molecular Weight (calculated)

61809.1 Da

IEP (calculated)

7.431

GRAVY (calculated)

-0.561

Length

565 amino acids

Sequence
(BLAST)

001: MTSQDGAAPP PAPPKRPAPG EQPSSEVLVT YKRRRTATRG ASSDPGAPCA TTVPCSGTSG QDGHQILPRH WITWRNTLEG FLQSPGVNKG GGIQCCIQDA
101: LRYNCCRSVQ KGNLNKGQGA SEEHPAGVAG AKEISSSIAL KDAIAASLDA NTAMCNNALL DIFVSEKFAM LCDLLVGTFH VSKVHEVIDL GKIDANMRNG
201: NYARNPALFN DHIQQIWEKF EQVGREMTSL ASNLPIISRA SYQKQASGVS EVEVAAEHRI EETSLGGFVE KIPKDSNTTT QFSPCDSGHS TIPKRSGTCG
301: LGRTCTCKQC GTSAEEEKSL ICDGCDTTYH FECVKRLHPA MKQIPDNWHC PACSSNKGKG KGKGKSAGAK KNVHDSLHGD CPLCDKLEVV KKIEPPEVAS
401: GIEAADEREG SSVPSVEEEN EPDLYTTALS KLCKHCGTCE DDDKQFLVCG HPYCPYKFYH IRCLRTSQIA LEKQKNLECW YCPSCLCRGC FKNKDDEEIT
501: LCDGCDEAYH VYCMTPKRTC VPKGHWYCPL CSVRRAREGM QRYEKSILKK QQHISAKRAS QSDDA

Best Arabidopsis Sequence Match ( AT3G52100.3 )
(BLAST)

001: MAFHVACPIT CRKICFCVLG FSRNLHGNEV KDVYLKEIHS LQEFVRNPWD AEVSKDGTVQ IHVPKLAVFD TGPRIAARNV GVGSDSAMEV VAASSNLVPA
101: KRTLVLQKKA VEVYAANDCS GDLEVSVKDL NEEDHDHHSA SITCHMCYLV EVGKSERAKM LSCKCCGKKY HRNCVKSWAQ HRDLFNWSSW ACPSCRICEG
201: CGTLGDPKKF MFCKRCDDAY HCDCQHPRHK NVSSGPYLCP KHTKCYSCES TVPGNGQSLR WFLGHTCCDA CGRLFVKGNY CPVCLKVYRD SEATPMVCCD
301: FCQRWVHCQC DGISDEKYMQ FQVDGNLQYK CSTCRGESYQ VKDLEDAVQE IWKRKDMADK DLIASLKASA RVVGQTGGAP LMNQPGSVER KVSEKAMVNG
401: EEEKPLRVLR IKSSRPQDSD SEKFGKHATE LSTVKAKKLV ISIGPRKTGV TNSTSCDVSK TASKSNGKQE KLQAEETFSR EERRSLLGKN SDEKRGSRGE
501: VTTLKAEGGF IGRHSDGKGD LNSGSHDSSQ KDSRRLLKLK IKKHNPEGQE SEAPSIVYER SKSGKGHRSK RKRASPPAEK SAFNEDEDVS LSREDSLLDE
601: MLDASWILKK LGKDAKGKKV QIHEASDDSW EKGVVSEVGG AGGTSKLMVT LENGKVKTVE LGKQGVRFVP QKQKRTRT

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4J5R1]
SUBAcon: [extracellular,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.