Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g058190.2.1 | Tomato | nucleus | 89.97 | 43.12 |
| Bra019757.1-P | Field mustard | cytosol | 35.64 | 35.89 |
| CDX98073 | Canola | cytosol | 35.64 | 35.89 |
| EES01867 | Sorghum | nucleus | 17.65 | 29.31 |
| Zm00001d042613_P001 | Maize | cytosol | 17.65 | 28.02 |
| Os01t0883400-00 | Rice | extracellular | 19.38 | 25.34 |
| GSMUA_Achr3P22100_001 | Banana | extracellular, vacuole | 34.26 | 25.26 |
| CDX68064 | Canola | nucleus | 39.45 | 24.68 |
| Bra003689.1-P | Field mustard | nucleus | 39.45 | 24.68 |
| CDX87531 | Canola | nucleus | 41.52 | 24.24 |
| Bra015682.1-P | Field mustard | nucleus | 41.52 | 24.24 |
| CDX88353 | Canola | nucleus | 40.14 | 24.07 |
| AT1G77250.1 | Thale cress | nucleus | 41.52 | 22.99 |
| CDX79193 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 39.1 | 22.69 |
| VIT_18s0001g01580.t01 | Wine grape | nucleus | 46.02 | 21.25 |
| KRH53317 | Soybean | nucleus | 47.06 | 21.05 |
| GSMUA_Achr5P01220_001 | Banana | nucleus | 37.02 | 19.6 |
| GSMUA_Achr11P... | Banana | nucleus | 39.1 | 19.15 |
| KRH18055 | Soybean | nucleus | 47.06 | 16.94 |
| KRH16456 | Soybean | nucleus | 46.71 | 16.81 |
| Zm00001d035008_P001 | Maize | nucleus, plastid | 31.49 | 16.4 |
| Zm00001d049736_P001 | Maize | nucleus, plastid | 30.8 | 15.95 |
| KXG24174 | Sorghum | nucleus | 29.07 | 15.24 |
| Os08t0105000-01 | Rice | nucleus | 29.07 | 14.92 |
| HORVU7Hr1G077650.5 | Barley | nucleus, plastid | 27.68 | 14.23 |
| TraesCS7D01G321100.1 | Wheat | nucleus, plastid | 27.68 | 14.21 |
| TraesCS7A01G324700.2 | Wheat | nucleus, plastid | 27.68 | 14.16 |
| TraesCS7B01G225200.1 | Wheat | nucleus, plastid | 27.34 | 14.08 |
| TraesCS3D01G202300.1 | Wheat | nucleus, plasma membrane | 30.1 | 8.03 |
| TraesCS3B01G231800.2 | Wheat | nucleus | 29.41 | 7.86 |
| Zm00001d011158_P001 | Maize | nucleus | 29.76 | 7.27 |
| KXG32724 | Sorghum | nucleus | 28.72 | 6.92 |
| TraesCSU01G205800.1 | Wheat | cytosol, nucleus, plastid | 5.54 | 1.95 |
| Os01t0547200-01 | Rice | nucleus | 1.04 | 0.34 |
Protein Annotations
| Gene3D:2.30.30.1150 | Gene3D:3.30.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M1BJ16 | PFAM:PF00628 |
| EnsemblPlantsGene:PGSC0003DMG400018006 | PGSC:PGSC0003DMG400018006 | EnsemblPlants:PGSC0003DMT400046398 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS50089 |
| PANTHER:PTHR10615 | PANTHER:PTHR10615:SF158 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000295B9C2 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018006]
Coordinates
chr4:+:56954235..56955814
Molecular Weight (calculated)
32110.9 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.441
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQAETYGVD KRCACQCCGE KADGGDSLAC DSCEEIYHLS CVEPTVTEIP IRSWYCAKCT AKGMESPHDN CVVCERLTTS SSVIIENEVE DLTSEDMVLE
101: LEDSTNGLVD GELKLCEGVE DSPCCNVCRT VVSNDNVRIC GHSFCPHKFY HERCLTRKQL DASGSCWYCP SCLCRACLND CDDDKIVLCD GCDHAYHIFC
201: MQPPHTSIPV GKWFCKKCDV QIQRIRKARR AFESSQNEAK KRKEQCGELG VPKGKDEEAL NESGGMEMLL DAAKTLNYQE DLAALGSKD
101: LEDSTNGLVD GELKLCEGVE DSPCCNVCRT VVSNDNVRIC GHSFCPHKFY HERCLTRKQL DASGSCWYCP SCLCRACLND CDDDKIVLCD GCDHAYHIFC
201: MQPPHTSIPV GKWFCKKCDV QIQRIRKARR AFESSQNEAK KRKEQCGELG VPKGKDEEAL NESGGMEMLL DAAKTLNYQE DLAALGSKD
001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK
Arabidopsis Description
At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.