Factsheet for Bra015682.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87531	Canola	nucleus	99.19	99.19
Bra019757.1-P	Field mustard	cytosol	35.96	62.02
Bra003689.1-P	Field mustard	nucleus	52.12	55.84
AT1G77250.1	Thale cress	nucleus	55.35	52.49
PGSC0003DMT400046398	Potato	nucleus	24.24	41.52
EES01867	Sorghum	nucleus	12.53	35.63
Zm00001d042613_P001	Maize	cytosol	12.53	34.07
Os01t0883400-00	Rice	extracellular	12.32	27.6
KRH53317	Soybean	nucleus	35.76	27.4
Solyc04g058190.2.1	Tomato	nucleus	33.13	27.2
VIT_18s0001g01580.t01	Wine grape	nucleus	33.94	26.84
GSMUA_Achr5P01220_001	Banana	nucleus	29.49	26.74
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	20.61	26.02
GSMUA_Achr11P...	Banana	nucleus	30.1	25.25
Zm00001d049736_P001	Maize	nucleus, plastid	27.07	24.01
Zm00001d035008_P001	Maize	nucleus, plastid	26.67	23.78
Os08t0105000-01	Rice	nucleus	26.06	22.91
KXG24174	Sorghum	nucleus	25.45	22.87
HORVU7Hr1G077650.5	Barley	nucleus, plastid	25.86	22.78
TraesCS7B01G225200.1	Wheat	nucleus, plastid	25.66	22.64
TraesCS7D01G321100.1	Wheat	nucleus, plastid	25.66	22.56
TraesCS7A01G324700.2	Wheat	nucleus, plastid	25.66	22.48
KRH18055	Soybean	nucleus	35.96	22.17
KRH16456	Soybean	nucleus	34.55	21.3
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	23.64	10.79
TraesCS3B01G231800.2	Wheat	nucleus	23.23	10.63
KXG32724	Sorghum	nucleus	25.05	10.33
Zm00001d011158_P001	Maize	nucleus	24.44	10.23
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.66	3.41
Bra040518.1-P	Field mustard	nucleus	13.94	3.22
Os01t0547200-01	Rice	nucleus	5.05	2.81
Bra039117.1-P	Field mustard	nucleus	10.71	2.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra015682	EnsemblPlants:Bra015682.1	EnsemblPlants:Bra015682.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4DGQ7	PFAM:PF00628
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI0002541A9D	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT1G77250 (E=2e-162) | PHD finger family protein

Coordinates

chrA07:-:21378296..21380432

Molecular Weight (calculated)

54276.1 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.615

Length

495 amino acids

Sequence
(BLAST)

001: MIVDEVISNG DGRESSQPNG TLNMANASSG DEKNSRICKR RKLESSVSTV GLSGIRGSVA CEMNDQRCSG GTHLTGGLPQ LSNPDEPTTE PHKYETVTAG
101: CQNVLSQVLA SKEFASLSKL LSENLQGVKI EDLPCRNLID TRMQEGAYEG SPVLFSTDLQ EVWKKLQDVG NGMAALAGSL LELSKTSCTE QLKQFNTVEP
201: KPHSNVETTR NDSGNDVCKL CGEKAAVKDF LACDHCDDMY HVSCAHPGEK EMSSDTWYCL NCTDNGFGSP HENCVVCEKK KTEKLLVKTD NNGCVDDSSA
301: ERKEDSNGSE ENSTSNMMNH GDEAMETKID SELCRTCGTK VEKGDGNRFI TCDHPFCPHK YYHIRCLTSK QIKLHNVSWY CSSCLCRNCL TDKDDDKIVL
401: CDGCDDAYHI YCMKPPCASV PDGEWFCRTC KVAIQKVRKI RNVVEKKKVG AVQKLKGKMN EIKPGSKGKG GLDSGVGGMD MLLNAADTLK DQEQM

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.