Factsheet for Zm00001d035008_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049736_P001	Maize	nucleus, plastid	77.48	77.06
KXG24174	Sorghum	nucleus	73.87	74.41
TraesCS7A01G324700.2	Wheat	nucleus, plastid	45.77	44.96
TraesCS7D01G321100.1	Wheat	nucleus, plastid	45.59	44.94
TraesCS7B01G225200.1	Wheat	nucleus, plastid	45.41	44.92
HORVU7Hr1G077650.5	Barley	nucleus, plastid	45.23	44.66
Os08t0105000-01	Rice	nucleus	43.6	42.98
GSMUA_Achr5P01220_001	Banana	nucleus	31.89	32.42
PGSC0003DMT400046398	Potato	nucleus	16.4	31.49
GSMUA_Achr11P...	Banana	nucleus	32.97	31.02
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	20.72	29.34
CDX98073	Canola	cytosol	15.14	29.27
Bra019757.1-P	Field mustard	cytosol	15.14	29.27
Zm00001d042613_P001	Maize	cytosol	9.01	27.47
CDX88353	Canola	nucleus	23.78	27.39
CDX87531	Canola	nucleus	23.96	26.87
Bra003689.1-P	Field mustard	nucleus	22.34	26.84
CDX68064	Canola	nucleus	22.34	26.84
Bra015682.1-P	Field mustard	nucleus	23.78	26.67
AT1G77250.1	Thale cress	nucleus	24.32	25.86
CDX79193	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	22.88	25.5
Solyc04g058190.2.1	Tomato	nucleus	27.57	25.37
VIT_18s0001g01580.t01	Wine grape	nucleus	25.05	22.2
KRH53317	Soybean	nucleus	25.23	21.67
KRH18055	Soybean	nucleus	25.05	17.31
KRH16456	Soybean	nucleus	24.68	17.06
Zm00001d011158_P001	Maize	nucleus	22.34	10.48
Zm00001d053697_P007	Maize	nucleus	15.32	3.96
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	4.5	3.05

Protein Annotations

EntrezGene:100383733	Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK78088.1	ProteinID:AQK78091.1
EMBL:BT068148	UniProt:C0PIM9	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF123
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000195CED7	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d035008	EnsemblPlants:Zm00001d035008_P001
EnsemblPlants:Zm00001d035008_T001	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

PHD-transcription factor 1RING/FYVE/PHD-type zinc finger family protein

Coordinates

chr6:-:1589350..1593430

Molecular Weight (calculated)

60329.4 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.505

Length

555 amino acids

Sequence
(BLAST)

001: MACDGAARGR PPKRPASGGL AQPNVVTYKR RRRGTGANAG HSAVTSGPDP AEMSAVVHAI DSQQGGRQTL GRHWRNWRDT LEGVLQSTAG KQGSGGIQSC
101: IRAALRFSGC PPTEHGNLAH DGGAGRDDPV GAVHSEENSG ALVQLEDGTA APLEANKTMC HNALFDILIS EKFAMLCDLL AATFHVSKPD DVIGLQIIDA
201: KMRNGDYAQN HALLDHDIKQ IWKKFEHVGQ EMAGLASSLS VISQASHQKQ ASGVSEIDVA EHKIEETSLV GVARKALREL TPQCDSGYST IPKRAGRSGS
301: DGICKDCGRK ADSKGRIICD RCEAAYHVSC LKLAIDEEAP AKWYCPSCVE PDVALKHKNH GRSHEGCDVC EWLVVKPEEP AEDVSEPELA VKTQESSVSS
401: MGEDSEPDLS TTALANLCKN CGTCEDEDRK FMVCGHGLCS FKFYHVLCLK ERQIASEKQK NLKCWYCPSC LCRRCFKDKD DEKIVLCDGC DEAYHIYCMD
501: PPCESVPRGK WFCTRCSARR SVQGMQRYEK SILEKVKRAP GANGPKVQAS AGPEK

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.