Factsheet for Bra019757.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 2
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98073	Canola	cytosol	100.0	100.0
Bra003689.1-P	Field mustard	nucleus	98.61	61.26
AT1G77250.1	Thale cress	nucleus	70.38	38.7
Bra015682.1-P	Field mustard	nucleus	62.02	35.96
PGSC0003DMT400046398	Potato	nucleus	35.89	35.64
EES01867	Sorghum	nucleus	18.47	30.46
Zm00001d042613_P001	Maize	cytosol	18.82	29.67
GSMUA_Achr3P22100_001	Banana	extracellular, vacuole	30.66	22.45
Os01t0883400-00	Rice	extracellular	15.68	20.36
GSMUA_Achr5P01220_001	Banana	nucleus	36.93	19.41
Solyc04g058190.2.1	Tomato	nucleus	39.02	18.57
KRH53317	Soybean	nucleus	40.07	17.8
GSMUA_Achr11P...	Banana	nucleus	36.59	17.8
VIT_18s0001g01580.t01	Wine grape	nucleus	36.93	16.93
Zm00001d035008_P001	Maize	nucleus, plastid	29.27	15.14
Zm00001d049736_P001	Maize	nucleus, plastid	29.27	15.05
KXG24174	Sorghum	nucleus	28.22	14.7
KRH18055	Soybean	nucleus	40.42	14.45
KRH16456	Soybean	nucleus	39.37	14.07
HORVU7Hr1G077650.5	Barley	nucleus, plastid	27.18	13.88
TraesCS7B01G225200.1	Wheat	nucleus, plastid	26.83	13.73
Os08t0105000-01	Rice	nucleus	26.83	13.68
TraesCS7D01G321100.1	Wheat	nucleus, plastid	26.83	13.68
TraesCS7A01G324700.2	Wheat	nucleus, plastid	26.83	13.63
TraesCS3D01G202300.1	Wheat	nucleus, plasma membrane	31.01	8.21
TraesCS3B01G231800.2	Wheat	nucleus	29.62	7.86
KXG32724	Sorghum	nucleus	30.31	7.25
Zm00001d011158_P001	Maize	nucleus	28.92	7.02
Bra040518.1-P	Field mustard	nucleus	15.68	2.1
TraesCSU01G205800.1	Wheat	cytosol, nucleus, plastid	5.57	1.95
Bra039117.1-P	Field mustard	nucleus	9.06	1.28
Os01t0547200-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.30.30.1150	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra019757	EnsemblPlants:Bra019757.1	EnsemblPlants:Bra019757.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787
UniProt:M4DTB4	PFAM:PF00628	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR10615	PANTHER:PTHR10615:SF158
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000253ECF2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT1G77250 (E=6e-092) | PHD finger family protein

Coordinates

chrA06:+:4589365..4590334

Molecular Weight (calculated)

32015.0 Da

IEP (calculated)

7.913

GRAVY (calculated)

-0.646

Length

287 amino acids

Sequence
(BLAST)

001: MAVLGNSLLE LSKTFSTEQL KKFYTRESKP NPNAENIRNV CVYDNCKLCG EKAAVTDCLA CDHCEDMYHV SCAHPGGKGM STGSWYCINC TANGIGSPHE
101: NCVVCERMKT DSRRVDKSTE CKEDSNESEE NSSCNINHGG HKVEVKRDSE LCRTCGTKVV ENGRFITCDH PFCPHKYYHI RCLTAKLVKL HGGARWYCSS
201: CLCRNCLTDK DDAYHIYCMK PPRASVPDEE WFCKTCNAAS QKVRKVRKAY EKKMGTLQKQ NGNLKSNGDS VGGGVDMLLN AADTLKD

Best Arabidopsis Sequence Match ( AT1G77250.1 )
(BLAST)

001: MFMEEATSNG KGTEHNQPNG LVESEALNNW SAGCGAMANS ANASSRDSKK IQTYKRRKLG RSYSANKCSE NDRFSMEGVS HSESRESVSY ERFSIRTHLT
101: GELPKPPSPN KPSSESTNHE TVTAGCQHVL SHVLASKEFA SLNRLLSENL QGVKIDDFTS RTLIDTRMKE GVYEGSPLLF STDLQEVWQK MQDVGNDMAV
201: LANSLLELSR TSYKEQLKQF YTGESKPCPN AENIRNDSVS DICKLCGEKA EARDCLACDH CEDMYHVSCA QPGGKGMPTH SWYCLDCTSK GIGSPHENCV
301: VCEKMKTQGM MKTDNRSVDT STECKEDSNE SEENSSCNMN HEVHHVEMSR DSELCRTCGT KVDSGGKYIT CDHPFCPHKY YHIRCLTSRQ IKLHGVRWYC
401: SSCLCRNCLT DKDDDKIVLC DGCDDAYHIY CMRPPCESVP NGEWFCTACK AAILKVQKAR KAFEKKMETV QKQKGIKPKN LQGKPQSKDN GELDQSVGGM
501: DMLLNAADTL KDEEQMTFQS IK

Arabidopsis Description

At1g77250 [Source:UniProtKB/TrEMBL;Acc:Q1JPM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.